Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 161 9e-35
seq116239 84.2 2e-11
>seq69808
Length=9325
Score = 161 bits (178), Expect = 9e-35
Identities = 684/1051 (65%), Gaps = 37/1051 (4%)
Strand=Plus/Minus
Query 137038 GGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCG 137097
||||| || |||||||| ||||| ||||| ||||| || | ||||| ||||| ||
Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815
Query 137098 ATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGA-GCTCTTTCCAGTT 137156
|| ||||| ||||| || | ||| ||| | |||| || ||| | | || ||||| ||
Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTT-GTTTAATTTTTTCTTTAAGTTCATTCCAATT 7756
Query 137157 CCACAGATTGTTCGATTGG-GTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTG 137215
||| |||| | |||| ||| ||||||||| |||| | || | | || | ||
Sbjct 7755 CCATAGAT----CAGTTGGTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAA 7700
Query 137216 CAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGA 137275
| || | | |||| | ||||||| || | | || || | ||| |||
Sbjct 7699 CTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCT 7640
Query 137276 CTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTA-GCTTCTTGG 137334
||| ||| ||||| ||||| ||||| | |||| | ||| |||| ||| |||||||
Sbjct 7639 CTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATT-TCTGTGCTTCTTCA 7581
Query 137335 CTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCG 137394
|| || || || | || || | || ||||| || | ||||| | || |||||
Sbjct 7580 CTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCA 7521
Query 137395 ATAGGTCTGTGTTTAAAATTTGATATTTGAGCG-CTAACAAGCGGATAAAAGTTTGCGTC 137453
|| |||| || |||||||||| ||| || || || |||||| | || ||
Sbjct 7520 ATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAA-GGATAATAATTAATATC 7462
Query 137454 TATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATC 137513
|||||| |||| | ||| | ||||| | | | | |||| | || || |||||
Sbjct 7461 AATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATC 7402
Query 137514 GAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATAC 137573
| ||||| ||| | || |||| |||| | ||||| || ||||| || || ||
Sbjct 7401 ATATTTTTTAT-CTGCTG--TAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAAC 7345
Query 137574 GGCCGTTTCTGTATTGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGG 137631
|| |||| | | || |||| |||| |||||||| | || ||||| || |
Sbjct 7344 AGCTATTTCA-TCTGGT-GCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTA 7287
Query 137632 ATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTG-ATCTTTATATATCATATA 137690
|| || | || | |||||| |||| ||| | || | ||||||||||| ||||||
Sbjct 7286 ATGGTGCCAATGTTTTGTTGATTACTTTT-TCGATTACACGCATCTTTATATAACATATA 7228
Query 137691 CGGAGTTCCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACG-CCATAA 137749
||||| || ||||| ||||||| ||| | | | | | | |||| | | |
Sbjct 7227 TGGAGTACCAGTTTCAACTTGAGATTCA--ATTATAGCAAACCATAATGAACGTGCTTTA 7170
Query 137750 TTTGTTCTCTAAACTTG-CCTTGAGCTTCAAAACTTTCGTAT--AGCCGTTTAAATTTTT 137806
||||| | | | | | |||| | |||| | ||| ||| || | | ||||||||
Sbjct 7169 ATTGTTTTATTAGCACGACCTTCATTTTCATA--TTTAATATAAAGTTGATCAAATTTTT 7112
Query 137807 CGCCCATAACAATCGTTAGACCCGGACACTCGTCGGGACACATCAACGACC-ATTTTCCT 137865
| ||| ||| | || ||| ||||| | | |||||||| || |||| ||| || |
Sbjct 7111 CACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATTATCAT 7052
Query 137866 CCCGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGA 137925
| | | ||| | || ||| || | | || |||| || ||| ||| | || | |
Sbjct 7051 CAGCTTC-AACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTA 6993
Query 137926 GCCTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCA 137985
|| ||||| | || |||| |||||||| ||||| ||||||||| |||
Sbjct 6992 GCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCA 6933
Query 137986 TGCCAAGGCTCGATATAGACGGCCATAGCTCCTTTTC---TTTTACCGCCTTGATCCACA 138042
||||| || || | ||| | || | || ||| || | ||||| |||||||| |||
Sbjct 6932 TGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACA 6873
Query 138043 TGAC--GCAACATACTATTAAAGACACGCAA 138071
| | ||||||| ||||||||||||| ||
Sbjct 6872 TATCTAGCAACAT--TATTAAAGACACGTAA 6844
>seq116239
Length=11340
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Minus
Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230
||| ||||| | ||||||||||| ||||| |||||| | || || | || || | |||
Sbjct 4782 CAAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTG-AGC 4724
Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289
| | || || || || | || ||| ||| ||| || || || || || || || |
Sbjct 4723 CGTCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAG 4664
Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGA 25347
|||| ||| | | |||| | || || ||| | || |||| ||| | |||| ||
Sbjct 4663 ATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTC--GGA 4606
Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383
|||||| |||||||| |||||||| ||||||| ||
Sbjct 4605 TTACAACATTCAAAAGGAATCCACACTTCATTTGGT 4570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444352794838080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |