Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq69808 161 9e-35 seq116239 84.2 2e-11 >seq69808 Length=9325 Score = 161 bits (178), Expect = 9e-35 Identities = 684/1051 (65%), Gaps = 37/1051 (4%) Strand=Plus/Minus Query 137038 GGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCG 137097 ||||| || |||||||| ||||| ||||| ||||| || | ||||| ||||| || Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815 Query 137098 ATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGA-GCTCTTTCCAGTT 137156 || ||||| ||||| || | ||| ||| | |||| || ||| | | || ||||| || Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTT-GTTTAATTTTTTCTTTAAGTTCATTCCAATT 7756 Query 137157 CCACAGATTGTTCGATTGG-GTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTG 137215 ||| |||| | |||| ||| ||||||||| |||| | || | | || | || Sbjct 7755 CCATAGAT----CAGTTGGTGTTTTATTCCACATATCATATTGAAGTATACCTTGGCTAA 7700 Query 137216 CAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGA 137275 | || | | |||| | ||||||| || | | || || | ||| ||| Sbjct 7699 CTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCT 7640 Query 137276 CTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTA-GCTTCTTGG 137334 ||| ||| ||||| ||||| ||||| | |||| | ||| |||| ||| ||||||| Sbjct 7639 CTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATT-TCTGTGCTTCTTCA 7581 Query 137335 CTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCG 137394 || || || || | || || | || ||||| || | ||||| | || ||||| Sbjct 7580 CTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCA 7521 Query 137395 ATAGGTCTGTGTTTAAAATTTGATATTTGAGCG-CTAACAAGCGGATAAAAGTTTGCGTC 137453 || |||| || |||||||||| ||| || || || |||||| | || || Sbjct 7520 ATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAA-GGATAATAATTAATATC 7462 Query 137454 TATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGAAATC 137513 |||||| |||| | ||| | ||||| | | | | |||| | || || ||||| Sbjct 7461 AATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATC 7402 Query 137514 GAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATAC 137573 | ||||| ||| | || |||| |||| | ||||| || ||||| || || || Sbjct 7401 ATATTTTTTAT-CTGCTG--TAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAAC 7345 Query 137574 GGCCGTTTCTGTATTGTCGCTG--TATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGG 137631 || |||| | | || |||| |||| |||||||| | || ||||| || | Sbjct 7344 AGCTATTTCA-TCTGGT-GCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTA 7287 Query 137632 ATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGACGTG-ATCTTTATATATCATATA 137690 || || | || | |||||| |||| ||| | || | ||||||||||| |||||| Sbjct 7286 ATGGTGCCAATGTTTTGTTGATTACTTTT-TCGATTACACGCATCTTTATATAACATATA 7228 Query 137691 CGGAGTTCCGGTTTCGACTTGAGTCTCAACAATTTTTCTGTGAAGATCCAACG-CCATAA 137749 ||||| || ||||| ||||||| ||| | | | | | | |||| | | | Sbjct 7227 TGGAGTACCAGTTTCAACTTGAGATTCA--ATTATAGCAAACCATAATGAACGTGCTTTA 7170 Query 137750 TTTGTTCTCTAAACTTG-CCTTGAGCTTCAAAACTTTCGTAT--AGCCGTTTAAATTTTT 137806 ||||| | | | | | |||| | |||| | ||| ||| || | | |||||||| Sbjct 7169 ATTGTTTTATTAGCACGACCTTCATTTTCATA--TTTAATATAAAGTTGATCAAATTTTT 7112 Query 137807 CGCCCATAACAATCGTTAGACCCGGACACTCGTCGGGACACATCAACGACC-ATTTTCCT 137865 | ||| ||| | || ||| ||||| | | |||||||| || |||| ||| || | Sbjct 7111 CACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATTATCAT 7052 Query 137866 CCCGTCCTAACCCTTTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGA 137925 | | | ||| | || ||| || | | || |||| || ||| ||| | || | | Sbjct 7051 CAGCTTC-AACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCCCTA 6993 Query 137926 GCCTTCATATCTTCGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCA 137985 || ||||| | || |||| |||||||| ||||| ||||||||| ||| Sbjct 6992 GCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCTGCA 6933 Query 137986 TGCCAAGGCTCGATATAGACGGCCATAGCTCCTTTTC---TTTTACCGCCTTGATCCACA 138042 ||||| || || | ||| | || | || ||| || | ||||| |||||||| ||| Sbjct 6932 TGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCAACA 6873 Query 138043 TGAC--GCAACATACTATTAAAGACACGCAA 138071 | | ||||||| ||||||||||||| || Sbjct 6872 TATCTAGCAACAT--TATTAAAGACACGTAA 6844 >seq116239 Length=11340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||||||||| ||||| |||||| | || || | || || | ||| Sbjct 4782 CAAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTG-AGC 4724 Query 25231 CAAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 | | || || || || | || ||| ||| ||| || || || || || || || | Sbjct 4723 CGTCTGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAG 4664 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGA 25347 |||| ||| | | |||| | || || ||| | || |||| ||| | |||| || Sbjct 4663 ATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTC--GGA 4606 Query 25348 TTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||| |||||||| |||||||| ||||||| || Sbjct 4605 TTACAACATTCAAAAGGAATCCACACTTCATTTGGT 4570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444352794838080