Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq116239 138 1e-27 seq69808 100 3e-16 >seq116239 Length=11340 Score = 138 bits (152), Expect = 1e-27 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || ||||||||||||||||||||||| || | ||| | | | || || | || Sbjct 4576 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCA-TCCTCCAATTG 4634 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || |||||||||||||| || ||||| || || |||||||| || |||||||| || Sbjct 4635 CTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTT 4694 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | ||| || || | |||||| |||| || || || | ||||| ||||| || || Sbjct 4695 TGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTTCCAGT 4754 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||||||| || ||||| ||||||||| Sbjct 4755 TAAAGTTTTTACAAAAATCTGCATTTTG 4782 >seq69808 Length=9325 Score = 100 bits (110), Expect = 3e-16 Identities = 158/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 9100 TATAAAACCGTTTGGGAAATGA-AGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGG 9158 |||||||| ||||||||||| || || || | || |||||||| ||| | || Sbjct 8056 TATAAAACAGTTTGGGAAATTTCAGTTAAA-ACACAAATGCAAATGGCTGCAGATCGTGG 8114 Query 9159 CGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTC--GTAGCCGCACCAACTTACGCT 9216 || || ||||||||||||||||| ||||| | ||| ||||| | ||||| ||| | | Sbjct 8115 GGCATTCATTGATCAGAGTCAATCATTTAA--TATTCATGTAGCTGAACCAAATTATGGT 8172 Query 9217 TTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTAT 9276 || | | || |||| || ||||| | ||||||||||| || ||||| ||| Sbjct 8173 TTACTAACATCAATGCATTTTTATGGATGGAAGTTAGGTTTAAAAACTGGAATGTATTAT 8232 Query 9277 TTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGTT 9318 || || |||||||| || || | |||| ||||||| ||| Sbjct 8233 TTACGAACAAAACCAGCTGCACATGCTATACAATTTACTGTT 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504556317820880