Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq116239 138 1e-27
seq69808 100 3e-16
>seq116239
Length=11340
Score = 138 bits (152), Expect = 1e-27
Identities = 157/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569
|| || ||||||||||||||||||||||| || | ||| | | | || || | ||
Sbjct 4576 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCA-TCCTCCAATTG 4634
Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629
|| || |||||||||||||| || ||||| || || |||||||| || |||||||| ||
Sbjct 4635 CTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTT 4694
Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689
| ||| || || | |||||| |||| || || || | ||||| ||||| || ||
Sbjct 4695 TGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTTCCAGT 4754
Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||||||| || ||||| |||||||||
Sbjct 4755 TAAAGTTTTTACAAAAATCTGCATTTTG 4782
>seq69808
Length=9325
Score = 100 bits (110), Expect = 3e-16
Identities = 158/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Plus
Query 9100 TATAAAACCGTTTGGGAAATGA-AGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGG 9158
|||||||| ||||||||||| || || || | || |||||||| ||| | ||
Sbjct 8056 TATAAAACAGTTTGGGAAATTTCAGTTAAA-ACACAAATGCAAATGGCTGCAGATCGTGG 8114
Query 9159 CGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTC--GTAGCCGCACCAACTTACGCT 9216
|| || ||||||||||||||||| ||||| | ||| ||||| | ||||| ||| | |
Sbjct 8115 GGCATTCATTGATCAGAGTCAATCATTTAA--TATTCATGTAGCTGAACCAAATTATGGT 8172
Query 9217 TTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTAT 9276
|| | | || |||| || ||||| | ||||||||||| || ||||| |||
Sbjct 8173 TTACTAACATCAATGCATTTTTATGGATGGAAGTTAGGTTTAAAAACTGGAATGTATTAT 8232
Query 9277 TTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGTT 9318
|| || |||||||| || || | |||| ||||||| |||
Sbjct 8233 TTACGAACAAAACCAGCTGCACATGCTATACAATTTACTGTT 8274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 504556317820880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |