Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 830 0.0
seq50502 206 4e-48
>seq69808
Length=9325
Score = 830 bits (920), Expect = 0.0
Identities = 1305/1850 (71%), Gaps = 26/1850 (1%)
Strand=Plus/Minus
Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454
|| |||||||| |||| ||| ||||| || ||||| | ||||| ||||||| || |||
Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190
Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514
||||| ||||||| |||| |||| || |||| ||||||||| | ||||||||
Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130
Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA--GGAATTT 68572
||||| ||||| || || | |||||| ||||||| || | | |||| | | |||||
Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072
Query 68573 CCCAAATAGTCTTAAA--AATCT-GT-TTGATATCATCTGGAAGGCTCGTATTTT---GA 68625
|||||| || ||| | ||||| || ||||| | ||| | | | ||| |
Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT----TGGTATATTATCAATTTCTTGT 8016
Query 68626 ATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCC 68685
|| || |||| || | || ||| |||| || || ||||||| ||| || | ||
Sbjct 8015 ATAGAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCT 7956
Query 68686 GTTAAAACTCT-AAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACG 68744
|||||| || | || ||| | |||||||| |||||| |||||||| || | |||
Sbjct 7955 GTTAAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACG 7897
Query 68745 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGT 68804
| || ||||| ||||| || || | ||||| ||||| || | |||||| || ||
Sbjct 7896 ATGATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGT 7837
Query 68805 TGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTT 68864
|||||| |||||||| ||||| | || ||| ||||| | ||||||| | | |||||
Sbjct 7836 TGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTT 7777
Query 68865 ATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTG 68924
||||| || | ||||||| ||| ||||||| |||| |||||| | ||| |||||
Sbjct 7776 TTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTG 7717
Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGC 68984
|| || || | || | |||||||| |||||||||||| | || | ||||||
Sbjct 7716 AAGTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGC 7657
Query 68985 TAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 69044
|| ||| ||||| |||||||||||||| |||||||||||||| || || | | ||| |
Sbjct 7656 TAATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAA 7597
Query 69045 ATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104
| ||||||||| ||| || |||| ||| | | | |||||||||||| || || ||
Sbjct 7596 TTTCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCC 7537
Query 69105 CTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGG 69164
|| || |||||||| || |||| ||| | |||||| ||| |||||||| | |||
Sbjct 7536 TTGTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGG 7477
Query 69165 ATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTT 69224
||||||||||||||| ||||||||||| | ||||| || | ||| || || ||
Sbjct 7476 ATAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTT 7417
Query 69225 TAGTTTGAGAAAATCAAATCGTCCAT---CTATAACAAACATATTCAGTGCTACAGATGC 69281
||||| ||||||| || | || || ||||||||||||| | || | || ||
Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357
Query 69282 TAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATT 69341
|| ||||||||| |||| |||| | || ||||| | || |||||||| |||||
Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297
Query 69342 ACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTA 69401
||||||||| || || || | ||||| |||||||| ||| ||||| || || || ||
Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237
Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA-AACGACCC 69460
| ||| | |||||||||||||||| |||||||| || |||| ||| || || |
Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177
Query 69461 TAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGA 69520
| || || ||| | || ||| || |||||||||| |||| || | || |
Sbjct 7176 T-GCTTTAATTGTTTTATTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118
Query 69521 ATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACA 69580
||| || ||||| |||| | || |||||||||| || ||||||||| ||||||||
Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058
Query 69581 CATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGAT 69640
||||||| | | ||| ||||||||||||| ||| |||||||| | || ||| | ||
Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998
Query 69641 CTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATAT 69700
| || | | || |||||| |||| ||||||||||| | || | ||| || | |||||
Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938
Query 69701 CAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGAT 69760
| | |||||||||||||| ||| || || | | || ||||||||||| || || ||||
Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878
Query 69761 CTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTAC 69820
| | ||||| ||| |||||| |||| | | ||| || | | |||||| ||| |||
Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818
Query 69821 CATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTC 69880
||||||| |||| ||| | | ||| ||| || || | | | || || || |
Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATAC 6758
Query 69881 CTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGC 69940
| || || |||| || || | || || ||| | || | | ||||||| || ||
Sbjct 6757 CACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAATTG 6698
Query 69941 TATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999
|||||| | || |||||| || |||||| || | |||| || | ||| | |||
Sbjct 6697 AATCATCAACCATTGTTAATAA-AAAACATGATGATAATTGAGGACGACGTGTTGCTGCA 6639
Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059
||||||||| || ||||| ||||| || | ||| || | ||||| || ||||||
Sbjct 6638 GCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCA 6579
Query 70060 ATAGCTGATTCTATA-TCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTG 70118
||| | | || ||| | ||| | || || || | || |||||||| |||||||| ||
Sbjct 6578 ATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATATGTTG 6520
Query 70119 AGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAA 70178
|||| ||| | ||||| ||| ||||| |||| |||||| |||| | ||||||||
Sbjct 6519 TGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAA 6460
Query 70179 CCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228
|||||||| || || ||| || | || |||||||| | |||||||
Sbjct 6459 ACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATTTA 6410
>seq50502
Length=11567
Score = 206 bits (228), Expect = 4e-48
Identities = 209/272 (77%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||| | ||| || || ||||| | || |||||||||||||| | |||||||| ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996
|| ||||| || |||||||| | |||||||||||||||||| ||| || ||||| |||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056
| | ||||||||| || || |||||| || ||||||||||| || |||||| |||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116
||||| ||| | || ||||| | ||||| | ||||||||||||| ||| ||
Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351
Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148
||||||| |||||||||| || || || ||||
Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685764289730160
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