Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq69808 830 0.0 seq50502 206 4e-48 >seq69808 Length=9325 Score = 830 bits (920), Expect = 0.0 Identities = 1305/1850 (71%), Gaps = 26/1850 (1%) Strand=Plus/Minus Query 68395 GCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAA 68454 || |||||||| |||| ||| ||||| || ||||| | ||||| ||||||| || ||| Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190 Query 68455 TGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTT 68514 ||||| ||||||| |||| |||| || |||| ||||||||| | |||||||| Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130 Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGA--GGAATTT 68572 ||||| ||||| || || | |||||| ||||||| || | | |||| | | ||||| Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072 Query 68573 CCCAAATAGTCTTAAA--AATCT-GT-TTGATATCATCTGGAAGGCTCGTATTTT---GA 68625 |||||| || ||| | ||||| || ||||| | ||| | | | ||| | Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT----TGGTATATTATCAATTTCTTGT 8016 Query 68626 ATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCC 68685 || || |||| || | || ||| |||| || || ||||||| ||| || | || Sbjct 8015 ATAGAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCT 7956 Query 68686 GTTAAAACTCT-AAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACG 68744 |||||| || | || ||| | |||||||| |||||| |||||||| || | ||| Sbjct 7955 GTTAAATCTTTTAATAAGAAATG-ATTAACTACAACAAATTCACCAGATAATACACGACG 7897 Query 68745 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGT 68804 | || ||||| ||||| || || | ||||| ||||| || | |||||| || || Sbjct 7896 ATGATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGT 7837 Query 68805 TGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTT 68864 |||||| |||||||| ||||| | || ||| ||||| | ||||||| | | ||||| Sbjct 7836 TGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTT 7777 Query 68865 ATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTG 68924 ||||| || | ||||||| ||| ||||||| |||| |||||| | ||| ||||| Sbjct 7776 TTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTG 7717 Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGC 68984 || || || | || | |||||||| |||||||||||| | || | |||||| Sbjct 7716 AAGTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGC 7657 Query 68985 TAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 69044 || ||| ||||| |||||||||||||| |||||||||||||| || || | | ||| | Sbjct 7656 TAATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAA 7597 Query 69045 ATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 | ||||||||| ||| || |||| ||| | | | |||||||||||| || || || Sbjct 7596 TTTCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCC 7537 Query 69105 CTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGG 69164 || || |||||||| || |||| ||| | |||||| ||| |||||||| | ||| Sbjct 7536 TTGTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGG 7477 Query 69165 ATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTT 69224 ||||||||||||||| ||||||||||| | ||||| || | ||| || || || Sbjct 7476 ATAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTT 7417 Query 69225 TAGTTTGAGAAAATCAAATCGTCCAT---CTATAACAAACATATTCAGTGCTACAGATGC 69281 ||||| ||||||| || | || || ||||||||||||| | || | || || Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357 Query 69282 TAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATT 69341 || ||||||||| |||| |||| | || ||||| | || |||||||| ||||| Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297 Query 69342 ACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTA 69401 ||||||||| || || || | ||||| |||||||| ||| ||||| || || || || Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237 Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA-AACGACCC 69460 | ||| | |||||||||||||||| |||||||| || |||| ||| || || | Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177 Query 69461 TAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGA 69520 | || || ||| | || ||| || |||||||||| |||| || | || | Sbjct 7176 T-GCTTTAATTGTTTTATTAGCACGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118 Query 69521 ATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACA 69580 ||| || ||||| |||| | || |||||||||| || ||||||||| |||||||| Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058 Query 69581 CATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGAT 69640 ||||||| | | ||| ||||||||||||| ||| |||||||| | || ||| | || Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998 Query 69641 CTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATAT 69700 | || | | || |||||| |||| ||||||||||| | || | ||| || | ||||| Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938 Query 69701 CAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGAT 69760 | | |||||||||||||| ||| || || | | || ||||||||||| || || |||| Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878 Query 69761 CTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTAC 69820 | | ||||| ||| |||||| |||| | | ||| || | | |||||| ||| ||| Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818 Query 69821 CATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTC 69880 ||||||| |||| ||| | | ||| ||| || || | | | || || || | Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATAC 6758 Query 69881 CTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGC 69940 | || || |||| || || | || || ||| | || | | ||||||| || || Sbjct 6757 CACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAATTG 6698 Query 69941 TATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCA 69999 |||||| | || |||||| || |||||| || | |||| || | ||| | ||| Sbjct 6697 AATCATCAACCATTGTTAATAA-AAAACATGATGATAATTGAGGACGACGTGTTGCTGCA 6639 Query 70000 TTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCA 70059 ||||||||| || ||||| ||||| || | ||| || | ||||| || |||||| Sbjct 6638 GCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCA 6579 Query 70060 ATAGCTGATTCTATA-TCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTG 70118 ||| | | || ||| | ||| | || || || | || |||||||| |||||||| || Sbjct 6578 ATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATATGTTG 6520 Query 70119 AGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAA 70178 |||| ||| | ||||| ||| ||||| |||| |||||| |||| | |||||||| Sbjct 6519 TGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAA 6460 Query 70179 CCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTA 70228 |||||||| || || ||| || | || |||||||| | ||||||| Sbjct 6459 ACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATTTA 6410 >seq50502 Length=11567 Score = 206 bits (228), Expect = 4e-48 Identities = 209/272 (77%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||| | ||| || || ||||| | || |||||||||||||| | |||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 || ||||| || |||||||| | |||||||||||||||||| ||| || ||||| ||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | | ||||||||| || || |||||| || ||||||||||| || |||||| ||| Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTAC 40116 ||||| ||| | || ||||| | ||||| | ||||||||||||| ||| || Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 40117 TTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||||||| |||||||||| || || || |||| Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGCCT 5383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685764289730160