Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq21713 277 1e-69 seq50502 165 6e-36 seq32061 125 6e-24 >seq21713 Length=22343 Score = 277 bits (306), Expect = 1e-69 Identities = 411/576 (71%), Gaps = 10/576 (2%) Strand=Plus/Minus Query 40844 AGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACA 40903 |||||| | ||| | || | || ||| | || ||||| ||||| ||||| | | | || Sbjct 18688 AGGATTTGAGGATCGAGAAGTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCA 18629 Query 40904 TTTTGGAGCAAAATATGACACTATGT-ACTCTGATTATACCAATAAA---GGAATGGATC 40959 || || ||| ||||| | || |||| || | |||| | || | ||||| |||| Sbjct 18628 CTTAGGGGCAGAATATAAAAC-ATGTCACAGTAATTA---CGATGGACAGGGAATTGATC 18573 Query 40960 AATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGT 41019 ||||| || || || || ||||| || |||| || |||| || || || Sbjct 18572 AATTAAAGCAAGTCATCGAGCAAATTAACACCAATCCAAATGATAGACGAATTATTATGA 18513 Query 41020 GCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATT-TGTTATGT 41078 ||| ||||| |||| ||| | | | |||||| | || ||||| |||| | |||| | Sbjct 18512 CCGCTTGGAATCCAATCGACATTCCTAAAATGGCACTACCTCCTTGCCATTGTCTTAT-T 18454 Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 || |||||||| ||||| ||| | |||||||| |||||||||||||||| || ||| Sbjct 18453 CAATTTTACGTGGCTAATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATG 18394 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || || ||||| ||||| ||||||||| ||||||| || ||||| || ||| Sbjct 18393 GGTCTTGGAGTGCCTTTTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCAC 18334 Query 41199 GTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATT 41258 | || |||||||| ||||| || ||||| ||||| ||||| |||| ||| |||| | Sbjct 18333 ATCACAAATTTAAAGCCTGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTA 18274 Query 41259 AATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTA 41318 ||||| || |||||| ||| ||| ||| ||| || || |||| ||||||| ||| Sbjct 18273 AATCATATTGAGCCGCTAAAAGAGCAATTGAATCGTGTGCCACGACCTTTTCCAAAGCTC 18214 Query 41319 CTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGC 41378 |||| ||||| |||||| ||| || |||||| | |||||||||| | Sbjct 18213 ATTATAAAACGAAAAGTTGAATGCATAGAAGATTTTACTTTTGATGATTTTGAAATGCAA 18154 Query 41379 GATTACAATCCGTACCCTAAAATCCACATGGACATG 41414 || |||||||| ||||| ||||| ||||||| ||| Sbjct 18153 GACTACAATCCTTACCCGAAAATTAACATGGAAATG 18118 >seq50502 Length=11567 Score = 165 bits (182), Expect = 6e-36 Identities = 195/264 (74%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || ||||||||||||| |||||||||||||| | ||||| | || || ||| | Sbjct 5375 GCATCATTTTGGACAGTTGAAGAAGTTGATTTATCAAAAGATATGGCTCACTGGGAAAAA 5316 Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876 |||| |||| |||||||| || ||||| || |||||||| || || Sbjct 5315 TTAACTAGTGGAGAACGTCATTTTATTTCACATGTTTTAGCATTTTTTGCAGCCTCTGAT 5256 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936 || || || ||||||||| | ||| || |||| |||||||| ||| | | |||||| Sbjct 5255 GGTATTGTAAATGAAAATCTTGTTGAACGATTTGGTCAAGAAGTACAAATTACTGAAGCA 5196 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||||||||| ||||||||||| || |||||| ||||||| ||||||||||| || Sbjct 5195 CGTTGTTTTTATGGCTTTCAAATTGCAATTGAAAATGTTCATTCAGAAATGTACAGCATT 5136 Query 43997 CTGATAGATACGTACATCAAAGAT 44020 | || || ||||| || |||||| Sbjct 5135 TTAATTGACACGTATATAAAAGAT 5112 Score = 147 bits (162), Expect = 2e-30 Identities = 183/246 (74%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 || ||||| || |||||| |||| || | ||||| | ||||| || ||||| | ||| Sbjct 5017 TTCAATGCTATTGAAACATTACCGTGTG-TTAAAAAAAAAGCCGATTGGGCTTTATCATG 4959 Query 44101 GATA--AATTCAAA-TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 ||| || | || || | ||| || ||| || || | || ||||| | ||| ||||| Sbjct 4958 GATTGCAAGTAAATCTGCTAATTTCGGTGAAAGAATTATTGCTTTTGCTGCTGTTGAAGG 4899 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 ||||||||| ||| ||||| || |||||||||||||| |||||||| | ||||| Sbjct 4898 AATTTTCTTTAGTGGAAGTTTTGCAGCTATATTTTGGTTAAAAAAACGAGGAATAATGCC 4839 Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 ||| || || ||||||||||| ||||| ||||||||||| | ||||| |||||||| Sbjct 4838 TGGTTTAACATTTTCAAATGAATTAATTTCACGTGATGAAGGACTTCATTGTGATTTTGC 4779 Query 44278 TTGCTT 44283 || || Sbjct 4778 ATGTTT 4773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 44347 GGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAAT 44406 ||||||||| || ||||| |||||| | ||| ||| ||||| || |||||||| ||||| Sbjct 4533 GGCAGTAAAAATTGAACAGGAATTTTTAACAGAAGCTTTACCAGTCAATTTAATTGGAAT 4474 Query 44407 GAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 |||| || ||| ||||||||||||| |||| ||||||||||| | ||| | Sbjct 4473 GAATTGTAAATTAATGTCTCAATATATTGAATTTGTTGCCGATCGTTTACTATGTGAATT 4414 Query 44467 GGG 44469 ||| Sbjct 4413 GGG 4411 >seq32061 Length=38618 Score = 125 bits (138), Expect = 6e-24 Identities = 196/279 (70%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| |||||| ||||| ||| | || ||| | || || || ||||| |||||| Sbjct 15939 AATAGTGGTTTGCATATTATCATATTTGACGAAATTGATGCTATTTGTAAAGCAAGAGGA 15880 Query 19600 TC---TGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 || || || |||| || |||||||| || ||||| |||||| | || | ||| | Sbjct 15879 TCCGTTGCTGGAAATAGTGGTGTACATGATACAGTTGTAAATCAATTACTTGCTAAAATC 15820 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTA 19713 || ||||| | || |||||||||||||||||||||| ||||| |||||| || | Sbjct 15819 GATGGTGTCGAGCAGTTGAATAATATTTTAGTTATTGGTATGACAAATAGAAGAGATATG 15760 Query 19714 ATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCC 19773 || || || | ||||| || || || || ||| || | || |||||| ||||| Sbjct 15759 ATCGATGAAGCTCTCTTACGTCCAGGACGTTTAGAAGTACAAATGGAAATTGGTTTACCA 15700 Query 19774 GATGAATGTGGACGTGTGGAAATTTTAAACATACATACA 19812 ||||| |||| | | ||||||| || || || ||| Sbjct 15699 AATGAAGGTGGTAGACAGCAAATTTTGAATATCCACACA 15661 Score = 104 bits (114), Expect = 2e-17 Identities = 196/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| |||||| ||||| || || || ||| | ||||||||| || || || Sbjct 16306 ATTGGTGGATTGGACAAAGAATTCAATGCTATATTTAGACGAGCATTTGCTTCACGAGTA 16247 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 || | | || | || | ||||| |||||||| |||||| || |||| | | | Sbjct 16246 TTCCCACCTGAATTAGTTGAGCAATTAGGATGTAAGCATGTTAAAGGTATTTTATTGTTT 16187 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || || || || ||| ||||| ||||| || || || || ||| | | | ||| Sbjct 16186 GGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGACAAATTGGTACAATGTT---AAAT 16130 Query 19423 CAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | || ||||||||||||||||| | | ||| |||||||||| ||| |||| Sbjct 16129 GCTCGTGAACCGAAAATTGTAAATGGTCCACAGGTTTTAGATAAATATGTTGGTGAATCT 16070 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 |||| ||| | |||| || ||||| ||||| || |||||| |||| Sbjct 16069 GAAGCTAATATCAGACGATTATTTGCAGACGCAGAGGAAGAAGAAAA 16023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396810324530470