Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq21713 277 1e-69
seq50502 165 6e-36
seq32061 125 6e-24
>seq21713
Length=22343
Score = 277 bits (306), Expect = 1e-69
Identities = 411/576 (71%), Gaps = 10/576 (2%)
Strand=Plus/Minus
Query 40844 AGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACA 40903
|||||| | ||| | || | || ||| | || ||||| ||||| ||||| | | | ||
Sbjct 18688 AGGATTTGAGGATCGAGAAGTTGGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCA 18629
Query 40904 TTTTGGAGCAAAATATGACACTATGT-ACTCTGATTATACCAATAAA---GGAATGGATC 40959
|| || ||| ||||| | || |||| || | |||| | || | ||||| ||||
Sbjct 18628 CTTAGGGGCAGAATATAAAAC-ATGTCACAGTAATTA---CGATGGACAGGGAATTGATC 18573
Query 40960 AATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGT 41019
||||| || || || || ||||| || |||| || |||| || || ||
Sbjct 18572 AATTAAAGCAAGTCATCGAGCAAATTAACACCAATCCAAATGATAGACGAATTATTATGA 18513
Query 41020 GCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATT-TGTTATGT 41078
||| ||||| |||| ||| | | | |||||| | || ||||| |||| | |||| |
Sbjct 18512 CCGCTTGGAATCCAATCGACATTCCTAAAATGGCACTACCTCCTTGCCATTGTCTTAT-T 18454
Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138
|| |||||||| ||||| ||| | |||||||| |||||||||||||||| || |||
Sbjct 18453 CAATTTTACGTGGCTAATGGAGAATTATCATGTCAGTTGTATCAAAGATCAGCAGATATG 18394
Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198
|| || || || || ||||| ||||| ||||||||| ||||||| || ||||| || |||
Sbjct 18393 GGTCTTGGAGTGCCTTTTAATATAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCAC 18334
Query 41199 GTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATT 41258
| || |||||||| ||||| || ||||| ||||| ||||| |||| ||| |||| |
Sbjct 18333 ATCACAAATTTAAAGCCTGGAGATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTA 18274
Query 41259 AATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTA 41318
||||| || |||||| ||| ||| ||| ||| || || |||| ||||||| |||
Sbjct 18273 AATCATATTGAGCCGCTAAAAGAGCAATTGAATCGTGTGCCACGACCTTTTCCAAAGCTC 18214
Query 41319 CTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGC 41378
|||| ||||| |||||| ||| || |||||| | |||||||||| |
Sbjct 18213 ATTATAAAACGAAAAGTTGAATGCATAGAAGATTTTACTTTTGATGATTTTGAAATGCAA 18154
Query 41379 GATTACAATCCGTACCCTAAAATCCACATGGACATG 41414
|| |||||||| ||||| ||||| ||||||| |||
Sbjct 18153 GACTACAATCCTTACCCGAAAATTAACATGGAAATG 18118
>seq50502
Length=11567
Score = 165 bits (182), Expect = 6e-36
Identities = 195/264 (74%), Gaps = 0/264 (0%)
Strand=Plus/Minus
Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816
|| ||||||||||||| |||||||||||||| | ||||| | || || ||| |
Sbjct 5375 GCATCATTTTGGACAGTTGAAGAAGTTGATTTATCAAAAGATATGGCTCACTGGGAAAAA 5316
Query 43817 TTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGAC 43876
|||| |||| |||||||| || ||||| || |||||||| || ||
Sbjct 5315 TTAACTAGTGGAGAACGTCATTTTATTTCACATGTTTTAGCATTTTTTGCAGCCTCTGAT 5256
Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936
|| || || ||||||||| | ||| || |||| |||||||| ||| | | ||||||
Sbjct 5255 GGTATTGTAAATGAAAATCTTGTTGAACGATTTGGTCAAGAAGTACAAATTACTGAAGCA 5196
Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996
|| ||||||||||| ||||||||||| || |||||| ||||||| ||||||||||| ||
Sbjct 5195 CGTTGTTTTTATGGCTTTCAAATTGCAATTGAAAATGTTCATTCAGAAATGTACAGCATT 5136
Query 43997 CTGATAGATACGTACATCAAAGAT 44020
| || || ||||| || ||||||
Sbjct 5135 TTAATTGACACGTATATAAAAGAT 5112
Score = 147 bits (162), Expect = 2e-30
Identities = 183/246 (74%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100
|| ||||| || |||||| |||| || | ||||| | ||||| || ||||| | |||
Sbjct 5017 TTCAATGCTATTGAAACATTACCGTGTG-TTAAAAAAAAAGCCGATTGGGCTTTATCATG 4959
Query 44101 GATA--AATTCAAA-TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157
||| || | || || | ||| || ||| || || | || ||||| | ||| |||||
Sbjct 4958 GATTGCAAGTAAATCTGCTAATTTCGGTGAAAGAATTATTGCTTTTGCTGCTGTTGAAGG 4899
Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217
||||||||| ||| ||||| || |||||||||||||| |||||||| | |||||
Sbjct 4898 AATTTTCTTTAGTGGAAGTTTTGCAGCTATATTTTGGTTAAAAAAACGAGGAATAATGCC 4839
Query 44218 TGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277
||| || || ||||||||||| ||||| ||||||||||| | ||||| ||||||||
Sbjct 4838 TGGTTTAACATTTTCAAATGAATTAATTTCACGTGATGAAGGACTTCATTGTGATTTTGC 4779
Query 44278 TTGCTT 44283
|| ||
Sbjct 4778 ATGTTT 4773
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 44347 GGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAAT 44406
||||||||| || ||||| |||||| | ||| ||| ||||| || |||||||| |||||
Sbjct 4533 GGCAGTAAAAATTGAACAGGAATTTTTAACAGAAGCTTTACCAGTCAATTTAATTGGAAT 4474
Query 44407 GAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466
|||| || ||| ||||||||||||| |||| ||||||||||| | ||| |
Sbjct 4473 GAATTGTAAATTAATGTCTCAATATATTGAATTTGTTGCCGATCGTTTACTATGTGAATT 4414
Query 44467 GGG 44469
|||
Sbjct 4413 GGG 4411
>seq32061
Length=38618
Score = 125 bits (138), Expect = 6e-24
Identities = 196/279 (70%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| |||||| ||||| ||| | || ||| | || || || ||||| ||||||
Sbjct 15939 AATAGTGGTTTGCATATTATCATATTTGACGAAATTGATGCTATTTGTAAAGCAAGAGGA 15880
Query 19600 TC---TGGTGTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
|| || || |||| || |||||||| || ||||| |||||| | || | ||| |
Sbjct 15879 TCCGTTGCTGGAAATAGTGGTGTACATGATACAGTTGTAAATCAATTACTTGCTAAAATC 15820
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTA 19713
|| ||||| | || |||||||||||||||||||||| ||||| |||||| || |
Sbjct 15819 GATGGTGTCGAGCAGTTGAATAATATTTTAGTTATTGGTATGACAAATAGAAGAGATATG 15760
Query 19714 ATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCC 19773
|| || || | ||||| || || || || ||| || | || |||||| |||||
Sbjct 15759 ATCGATGAAGCTCTCTTACGTCCAGGACGTTTAGAAGTACAAATGGAAATTGGTTTACCA 15700
Query 19774 GATGAATGTGGACGTGTGGAAATTTTAAACATACATACA 19812
||||| |||| | | ||||||| || || || |||
Sbjct 15699 AATGAAGGTGGTAGACAGCAAATTTTGAATATCCACACA 15661
Score = 104 bits (114), Expect = 2e-17
Identities = 196/287 (68%), Gaps = 6/287 (2%)
Strand=Plus/Minus
Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302
||||| |||||| ||||| || || || ||| | ||||||||| || || ||
Sbjct 16306 ATTGGTGGATTGGACAAAGAATTCAATGCTATATTTAGACGAGCATTTGCTTCACGAGTA 16247
Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362
|| | | || | || | ||||| |||||||| |||||| || |||| | | |
Sbjct 16246 TTCCCACCTGAATTAGTTGAGCAATTAGGATGTAAGCATGTTAAAGGTATTTTATTGTTT 16187
Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422
|| || || || ||| ||||| ||||| || || || || ||| | | | |||
Sbjct 16186 GGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGACAAATTGGTACAATGTT---AAAT 16130
Query 19423 CAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479
| | || ||||||||||||||||| | | ||| |||||||||| ||| ||||
Sbjct 16129 GCTCGTGAACCGAAAATTGTAAATGGTCCACAGGTTTTAGATAAATATGTTGGTGAATCT 16070
Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526
|||| ||| | |||| || ||||| ||||| || |||||| ||||
Sbjct 16069 GAAGCTAATATCAGACGATTATTTGCAGACGCAGAGGAAGAAGAAAA 16023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396810324530470
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |