Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq69808 237 1e-57 >seq69808 Length=9325 Score = 237 bits (262), Expect = 1e-57 Identities = 781/1195 (65%), Gaps = 43/1195 (4%) Strand=Plus/Minus Query 130811 GGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCC 130870 || ||||| |||||||| || || || ||||||||||| | ||| || ||||| ||| Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815 Query 130871 ACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCC 130930 | ||| | |||||| || | ||| || | |||||| || | ||||| ||||| | Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTC 7755 Query 130931 CATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCG 130990 |||||| || ||| | || |||||||||||| |||| ||||| |||| || | Sbjct 7754 CATAGATCAGTTGGTGTT---TTATTCCACATATCATATTGAAGTATACCTTGGCTAACT 7698 Query 130991 GGACTGGAT---TCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCT 131047 || ||| || | | ||| || || | | ||| | ||| ||||| Sbjct 7697 GGT---GATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCC 7641 Query 131048 TCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTG 131107 || || || || |||||||| ||||| ||||||| |||||||| | |||| | Sbjct 7640 TCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCA 7581 Query 131108 CTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCC 131167 || || || || | |||||||||||| || || || | || |||| |||| || Sbjct 7580 CTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCA 7521 Query 131168 ACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGTG--GGATAAAGGTTAATGT 131225 | |||| ||| ||||| |||| | | | ||| |||||| ||||| | Sbjct 7520 ATTGGTCGATGACGAAAATTTGATTTTTTTG--CTTCTGGTAAAGGATAATAATTAATAT 7463 Query 131226 CAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAAT 131285 |||| ||||| || ||||| | ||||||| ||| || ||| | ||| | |||| Sbjct 7462 CAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAAT 7403 Query 131286 CAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAA 131345 || | | | | | | ||||| ||||| | ||||| || | |||||||| Sbjct 7402 CATATTTTTTATCTGCTG---TAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAA 7346 Query 131346 CTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTA 131405 | || |||| || | |||| | ||||||||| | |||| |||||| | || | Sbjct 7345 CAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAA 7286 Query 131406 TGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAG 131464 ||||||| | ||||||||||| ||||| ||| ||| | || || || | ||| || Sbjct 7285 TGGTGCCAATGTTTTGTTGATTACTTTTTCGATT-ACACGCATCTTTATATAACATATAT 7227 Query 131465 GGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACA 131522 || || || ||||| ||||||| |||||| || | | || | | | || || | Sbjct 7226 GGAGTACCAGTTTCAACTTGAGATTCAATTAT--AGCAAACCATAATGAACGTGCTTT-A 7170 Query 131523 ATTGATATTTGTATTGGC-CG--CGT--TTTTCGTAATTTTCGTACAACGTT--TCAAAG 131575 |||| || |||| || || | | ||||| || ||| || || ||| ||||| Sbjct 7169 ATTG----TTTTATTAGCACGACCTTCATTTTCATA--TTTAATATAAAGTTGATCAAAT 7116 Query 131576 TTTTGGCCAAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACG 131635 |||| || | | | ||| ||||||| |||||||||| ||||| Sbjct 7115 TTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATTA 7056 Query 131636 CCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCT 131695 | | |||||| || |||||||| ||||| || | ||| | || || || | ||| Sbjct 7055 TCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCC 6996 Query 131696 CTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCC 131755 ||||| | |||||||| || || ||||||| ||||||||||| || ||||| || Sbjct 6995 CTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCT 6936 Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCG---CTTACCGCCTTGATTA 131812 |||||||| ||||| ||||| | || | ||| ||| || ||||| ||||||| | Sbjct 6935 GCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCA 6876 Query 131813 ACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCA 131872 |||| | | | | || || | || || ||||| || | ||||| || | | ||| Sbjct 6875 ACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCA 6816 Query 131873 TTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCT 131932 || |||| ||| | | || || | | || || || || | ||||||||| Sbjct 6815 TTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATACCA 6756 Query 131933 CCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTG--TTATAGATACCTTC 131985 || | | ||| || || | |||||||| ||| | || ||| | |||||||| Sbjct 6755 CCAGCATTTTTTGATATCATTGCGCATT--GTTCAATTGATTTAAATATACCTTC 6703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424244085302928