Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 237 1e-57
>seq69808
Length=9325
Score = 237 bits (262), Expect = 1e-57
Identities = 781/1195 (65%), Gaps = 43/1195 (4%)
Strand=Plus/Minus
Query 130811 GGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCC 130870
|| ||||| |||||||| || || || ||||||||||| | ||| || ||||| |||
Sbjct 7874 GGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCA 7815
Query 130871 ACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCC 130930
| ||| | |||||| || | ||| || | |||||| || | ||||| ||||| |
Sbjct 7814 ATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTC 7755
Query 130931 CATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCG 130990
|||||| || ||| | || |||||||||||| |||| ||||| |||| || |
Sbjct 7754 CATAGATCAGTTGGTGTT---TTATTCCACATATCATATTGAAGTATACCTTGGCTAACT 7698
Query 130991 GGACTGGAT---TCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCT 131047
|| ||| || | | ||| || || | | ||| | ||| |||||
Sbjct 7697 GGT---GATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCC 7641
Query 131048 TCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTG 131107
|| || || || |||||||| ||||| ||||||| |||||||| | |||| |
Sbjct 7640 TCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCA 7581
Query 131108 CTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCC 131167
|| || || || | |||||||||||| || || || | || |||| |||| ||
Sbjct 7580 CTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCA 7521
Query 131168 ACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGGTG--GGATAAAGGTTAATGT 131225
| |||| ||| ||||| |||| | | | ||| |||||| ||||| |
Sbjct 7520 ATTGGTCGATGACGAAAATTTGATTTTTTTG--CTTCTGGTAAAGGATAATAATTAATAT 7463
Query 131226 CAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAAT 131285
|||| ||||| || ||||| | ||||||| ||| || ||| | ||| | ||||
Sbjct 7462 CAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAAT 7403
Query 131286 CAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAA 131345
|| | | | | | | ||||| ||||| | ||||| || | ||||||||
Sbjct 7402 CATATTTTTTATCTGCTG---TAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAA 7346
Query 131346 CTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTA 131405
| || |||| || | |||| | ||||||||| | |||| |||||| | || |
Sbjct 7345 CAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAA 7286
Query 131406 TGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAG 131464
||||||| | ||||||||||| ||||| ||| ||| | || || || | ||| ||
Sbjct 7285 TGGTGCCAATGTTTTGTTGATTACTTTTTCGATT-ACACGCATCTTTATATAACATATAT 7227
Query 131465 GGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--AGAGTTTTCGAGCAGACA 131522
|| || || ||||| ||||||| |||||| || | | || | | | || || |
Sbjct 7226 GGAGTACCAGTTTCAACTTGAGATTCAATTAT--AGCAAACCATAATGAACGTGCTTT-A 7170
Query 131523 ATTGATATTTGTATTGGC-CG--CGT--TTTTCGTAATTTTCGTACAACGTT--TCAAAG 131575
|||| || |||| || || | | ||||| || ||| || || ||| |||||
Sbjct 7169 ATTG----TTTTATTAGCACGACCTTCATTTTCATA--TTTAATATAAAGTTGATCAAAT 7116
Query 131576 TTTTGGCCAAACGAACTGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACG 131635
|||| || | | | ||| ||||||| |||||||||| |||||
Sbjct 7115 TTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAATTA 7056
Query 131636 CCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCT 131695
| | |||||| || |||||||| ||||| || | ||| | || || || | |||
Sbjct 7055 TCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCC 6996
Query 131696 CTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCC 131755
||||| | |||||||| || || ||||||| ||||||||||| || ||||| ||
Sbjct 6995 CTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATATCT 6936
Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCG---CTTACCGCCTTGATTA 131812
|||||||| ||||| ||||| | || | ||| ||| || ||||| ||||||| |
Sbjct 6935 GCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGATCA 6876
Query 131813 ACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCA 131872
|||| | | | | || || | || || ||||| || | ||||| || | | |||
Sbjct 6875 ACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATACCA 6816
Query 131873 TTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCT 131932
|| |||| ||| | | || || | | || || || || | |||||||||
Sbjct 6815 TTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATACCA 6756
Query 131933 CCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTG--TTATAGATACCTTC 131985
|| | | ||| || || | |||||||| ||| | || ||| | ||||||||
Sbjct 6755 CCAGCATTTTTTGATATCATTGCGCATT--GTTCAATTGATTTAAATATACCTTC 6703
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424244085302928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |