Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_027995.1
Length=41666
Score E
Sequences producing significant alignments: (Bits) Value
seq30817 116 1e-21
seq92101 87.8 5e-13
>seq30817
Length=4284
Score = 116 bits (128), Expect = 1e-21
Identities = 190/271 (70%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 41187 ATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCT 41246
|| || ||| |||| | ||||| ||||||||||| ||||| | |||||| ||||| ||
Sbjct 63 ATCGGTAACCTAGGGCAAGATCCTGAAATCCGTTATATGCCTAACGGCGGAGCGGTGGCA 122
Query 41247 AATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAA 41306
|| || | | || || ||||||| ||| || || ||||| |||| | |||
Sbjct 123 AACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAA 182
Query 41307 CAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATAC 41366
|||| ||||||||||| || || || ||||| || | || ||| |||| | ||||||
Sbjct 183 AAAACCGAATGGCACCGTGTGGTTATTTTCGGCAAATTAGCTGAAGTTGCAGGGGAATAC 242
Query 41367 CTGCGCAAAGG-TAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGA 41425
||| ||||| | ||| || | || ||||| | | ||| ||||||||||||||
Sbjct 243 CTGAAAAAAGGCTCACAA-GTCTATATCGAAGGTTCGTTACAAACACGTAAATGGCAGGA 301
Query 41426 CCAGGCTGGCGTTGATCGCTACACCACTGAA 41456
||| || |||||||| || || |||
Sbjct 302 CCAAAGCGGTCAAGATCGCTATACAACAGAA 332
>seq92101
Length=2780
Score = 87.8 bits (96), Expect = 5e-13
Identities = 235/357 (66%), Gaps = 2/357 (1%)
Strand=Plus/Minus
Query 9165 AGGTACGCGTTCACGCCTTCAATCACGTCATTGACGTATTGTTTG-GTGATGCCACGGTC 9223
||||| || || || |||||||| || |||| | ||| || | || ||| || ||
Sbjct 1579 AGGTAAGCATTTACACCTTCAATTACATCATCCAAATAT-GTACGAGTAATGTTTCGATC 1521
Query 9224 TACGGCCCACAGGTGTGCACGCAGCAGACTGTCATTGATGATGTCAGCCGTGCGAACCAC 9283
|| ||||| ||||||||||| || ||||| ||||| || | || || || | ||
Sbjct 1520 AACTGCCCAAAGGTGTGCACGAAGAAGACTATCATTAATTAAATCTGCTGTTCTTCTTAC 1461
Query 9284 GCACAGGAACGCCCATTTCTGATCGCTGGAACAGGTGCGGTTGCCCCACAGGCGGAAACC 9343
| | ||| ||| || |||||| ||||| || | || ||||| || | | ||
Sbjct 1460 TGATAAAAACTTCCACTTTGAATCGCTTGAACACGTTCTATTTCCCCAAAGTCTATATCC 1401
Query 9344 GTCCTGGCGAATGATGGTGGTGACTTCGTTTTCATTCAGCAGGTTTGCACGGCTGGATGT 9403
| || |||| ||||| | | ||||||||| || | | || || | | ||
Sbjct 1400 CTTTTGATGAATAATGGTTGCAATTTCGTTTTCGTTTAAATGATTAGCCCTACAACTTGC 1341
Query 9404 GTCACCCAGGGTGAAATCAATGGTTCGGGCCGTGCCCTGGATGCCATAGATTTCCTGGTT 9463
||||| || || ||||||| | || || || || || |||| || ||||| ||
Sbjct 1340 ATCACCAAGTGTAAAATCAACAGGTCTTGCAGTACCAACAATACCATTAATCTCCTGATT 1281
Query 9464 TGATGGTGACCACCAGAAACCGCGCTCGTTGTCGATGCGGGCAATCAGACCAGCCAC 9520
||| ||||| ||||| || || | || || || || |||||||| || || ||
Sbjct 1280 TGAAGGTGATCACCAAAACCCATGTTCATTATCAATTTTAGCAATCAGTCCTGCAAC 1224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132998747019984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |