Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq30817 116 1e-21 seq92101 87.8 5e-13 >seq30817 Length=4284 Score = 116 bits (128), Expect = 1e-21 Identities = 190/271 (70%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 41187 ATTGGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCT 41246 || || ||| |||| | ||||| ||||||||||| ||||| | |||||| ||||| || Sbjct 63 ATCGGTAACCTAGGGCAAGATCCTGAAATCCGTTATATGCCTAACGGCGGAGCGGTGGCA 122 Query 41247 AATCTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAA 41306 || || | | || || ||||||| ||| || || ||||| |||| | ||| Sbjct 123 AACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAA 182 Query 41307 CAAACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATAC 41366 |||| ||||||||||| || || || ||||| || | || ||| |||| | |||||| Sbjct 183 AAAACCGAATGGCACCGTGTGGTTATTTTCGGCAAATTAGCTGAAGTTGCAGGGGAATAC 242 Query 41367 CTGCGCAAAGG-TAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGA 41425 ||| ||||| | ||| || | || ||||| | | ||| |||||||||||||| Sbjct 243 CTGAAAAAAGGCTCACAA-GTCTATATCGAAGGTTCGTTACAAACACGTAAATGGCAGGA 301 Query 41426 CCAGGCTGGCGTTGATCGCTACACCACTGAA 41456 ||| || |||||||| || || ||| Sbjct 302 CCAAAGCGGTCAAGATCGCTATACAACAGAA 332 >seq92101 Length=2780 Score = 87.8 bits (96), Expect = 5e-13 Identities = 235/357 (66%), Gaps = 2/357 (1%) Strand=Plus/Minus Query 9165 AGGTACGCGTTCACGCCTTCAATCACGTCATTGACGTATTGTTTG-GTGATGCCACGGTC 9223 ||||| || || || |||||||| || |||| | ||| || | || ||| || || Sbjct 1579 AGGTAAGCATTTACACCTTCAATTACATCATCCAAATAT-GTACGAGTAATGTTTCGATC 1521 Query 9224 TACGGCCCACAGGTGTGCACGCAGCAGACTGTCATTGATGATGTCAGCCGTGCGAACCAC 9283 || ||||| ||||||||||| || ||||| ||||| || | || || || | || Sbjct 1520 AACTGCCCAAAGGTGTGCACGAAGAAGACTATCATTAATTAAATCTGCTGTTCTTCTTAC 1461 Query 9284 GCACAGGAACGCCCATTTCTGATCGCTGGAACAGGTGCGGTTGCCCCACAGGCGGAAACC 9343 | | ||| ||| || |||||| ||||| || | || ||||| || | | || Sbjct 1460 TGATAAAAACTTCCACTTTGAATCGCTTGAACACGTTCTATTTCCCCAAAGTCTATATCC 1401 Query 9344 GTCCTGGCGAATGATGGTGGTGACTTCGTTTTCATTCAGCAGGTTTGCACGGCTGGATGT 9403 | || |||| ||||| | | ||||||||| || | | || || | | || Sbjct 1400 CTTTTGATGAATAATGGTTGCAATTTCGTTTTCGTTTAAATGATTAGCCCTACAACTTGC 1341 Query 9404 GTCACCCAGGGTGAAATCAATGGTTCGGGCCGTGCCCTGGATGCCATAGATTTCCTGGTT 9463 ||||| || || ||||||| | || || || || || |||| || ||||| || Sbjct 1340 ATCACCAAGTGTAAAATCAACAGGTCTTGCAGTACCAACAATACCATTAATCTCCTGATT 1281 Query 9464 TGATGGTGACCACCAGAAACCGCGCTCGTTGTCGATGCGGGCAATCAGACCAGCCAC 9520 ||| ||||| ||||| || || | || || || || |||||||| || || || Sbjct 1280 TGAAGGTGATCACCAAAACCCATGTTCATTATCAATTTTAGCAATCAGTCCTGCAAC 1224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132998747019984