Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq69808 196 6e-45 >seq69808 Length=9325 Score = 196 bits (216), Expect = 6e-45 Identities = 459/686 (67%), Gaps = 9/686 (1%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 ||||| |||| ||| || || ||||| |||| |||||||| || |||||||| || || Sbjct 7892 TAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGAT 7833 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 ||||||||||||||||| || || | | || || | ||| | | || || ||| Sbjct 7832 GCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCT 7773 Query 110828 TTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 || || ||| ||| | | ||| | || ||||| | || |||||| ||| | |||| Sbjct 7772 TTAAGTTCATTCCAATTCCATAGATCAG-TTGGTGTTTTATT-CCACATATCATATTGAA 7715 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | |||||| | || || || ||| | |||||||| ||||| | |||||| | Sbjct 7714 GTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTA 7655 Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005 |||| || || ||||| | | | | ||| || |||||||| || | ||| | | Sbjct 7654 ATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATT 7595 Query 111006 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 111065 || ||||| || ||| ||| ||| || ||||||||| |||| || | |||| Sbjct 7594 TCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTT 7535 Query 111066 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGGGA 111124 | || || | |||||| |||| || || | ||| || ||| || ||| | ||| Sbjct 7534 GTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGC-TTCTGGTAAAGGA 7476 Query 111125 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 111184 ||| |||| | ||||| | | || | |||| | |||||||| ||||| | ||| | | Sbjct 7475 TAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTA 7416 Query 111185 AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGAT 111244 ||||||| | ||||| | | | ||| | | ||| || | | || ||||| Sbjct 7415 AGTTTTTTAAAATCATATTT---TTTATCTGCTGTAACAAACATATTTAAAGCAATTGAA 7359 Query 111245 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAG 111304 || ||||| |||||||| | ||||| ||| || || | |||||||||||| | Sbjct 7358 GCTAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGA 7299 Query 111305 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTG 111364 || || ||||| || || | || | ||| ||||| || || |||||||| || Sbjct 7298 TTACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTA 7239 Query 111365 TAGAGCATGTAGGGCGTCCCCGTCTC 111390 || | ||| || || || || || || Sbjct 7238 TATAACATATATGGAGTACCAGTTTC 7213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626985588782400