Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 196 6e-45
>seq69808
Length=9325
Score = 196 bits (216), Expect = 6e-45
Identities = 459/686 (67%), Gaps = 9/686 (1%)
Strand=Plus/Minus
Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767
||||| |||| ||| || || ||||| |||| |||||||| || |||||||| || ||
Sbjct 7892 TAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGAT 7833
Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827
||||||||||||||||| || || | | || || | ||| | | || || |||
Sbjct 7832 GCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCT 7773
Query 110828 TTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885
|| || ||| ||| | | ||| | || ||||| | || |||||| ||| | ||||
Sbjct 7772 TTAAGTTCATTCCAATTCCATAGATCAG-TTGGTGTTTTATT-CCACATATCATATTGAA 7715
Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945
| | |||||| | || || || ||| | |||||||| ||||| | |||||| |
Sbjct 7714 GTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGCTA 7655
Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005
|||| || || ||||| | | | | ||| || |||||||| || | ||| | |
Sbjct 7654 ATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATT 7595
Query 111006 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 111065
|| ||||| || ||| ||| ||| || ||||||||| |||| || | ||||
Sbjct 7594 TCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTT 7535
Query 111066 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACGGGA 111124
| || || | |||||| |||| || || | ||| || ||| || ||| | |||
Sbjct 7534 GTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGC-TTCTGGTAAAGGA 7476
Query 111125 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA 111184
||| |||| | ||||| | | || | |||| | |||||||| ||||| | ||| | |
Sbjct 7475 TAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTA 7416
Query 111185 AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGAT 111244
||||||| | ||||| | | | ||| | | ||| || | | || |||||
Sbjct 7415 AGTTTTTTAAAATCATATTT---TTTATCTGCTGTAACAAACATATTTAAAGCAATTGAA 7359
Query 111245 GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAG 111304
|| ||||| |||||||| | ||||| ||| || || | |||||||||||| |
Sbjct 7358 GCTAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGA 7299
Query 111305 TTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTG 111364
|| || ||||| || || | || | ||| ||||| || || |||||||| ||
Sbjct 7298 TTACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTA 7239
Query 111365 TAGAGCATGTAGGGCGTCCCCGTCTC 111390
|| | ||| || || || || || ||
Sbjct 7238 TATAACATATATGGAGTACCAGTTTC 7213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 626985588782400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |