Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq69808 161 1e-34 >seq69808 Length=9325 Score = 161 bits (178), Expect = 1e-34 Identities = 478/728 (66%), Gaps = 13/728 (2%) Strand=Plus/Minus Query 118142 ATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGG 118201 ||| || |||||||| ||||| | | || | |||||||||| | || || || Sbjct 7932 ATTAACTACAACAAATTCACCAGATAATACACGACGATGATAGATATTTGATGTATAAGG 7873 Query 118202 CTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCAT 118261 |||||| | || || ||||| || ||||| ||||| || ||||| ||||| ||||| || Sbjct 7872 CTCAAATGATTCGTTATTACCTAAAATTTGTGCTGTTGATGCTGTTGGCATTGGTGCAAT 7813 Query 118262 GAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGT--CG 118319 | | || |||| ||| | || |||| ||| || || | | ||| | | Sbjct 7812 TAACAAAGAATTTCGGATACCATGTTGTTTAATTTTTTCTTTAAGTTCATTCCAATTCCA 7753 Query 118320 TAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGC 118379 ||| | || || || | | |||||||||| | || || ||||||||| |||| Sbjct 7752 TAGATCAG-TTGGTGTTTTATT-CCACATATCATATTGAAGTATACCTTGGCTAACTGGT 7695 Query 118380 GATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGG 118439 ||||| ||| |||| ||||||| || | | || || |||||| | || ||||| | Sbjct 7694 GATCCATCATATGTTTCATATGAACCATATAATTCAGCTAATTCGCAACTAGCCTCTAAT 7635 Query 118440 GCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCA 118499 || | | ||| ||||||||||| || | ||| | | || || || || ||| Sbjct 7634 GCACCATAATAAATTGTTTCAAATATTTGTTGATTTAATTTCTGTGCTTCTTCACTTTCA 7575 Query 118500 AACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 118559 | | | || ||||||||| |||| || | ||||| || || | |||||||| Sbjct 7574 TATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCCTTGTACGCCAATACCAATTGGT 7515 Query 118560 CGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAAC 118618 ||||| | | ||| || || || ||| | |||||| |||| |||| |||| Sbjct 7514 CGATGACGAAAATTTGATTTTTTTGCT-TCTGGTAAAGGATAATAATTAATATCAATAAT 7456 Query 118619 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACT 118678 |||| | |||| | || |||| ||||| | ||| | ||| |||| ||||| | | Sbjct 7455 TTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTTAAGTTTTTTAAAATCATATTT 7396 Query 118679 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 118738 | ||| | | ||| || || | || ||||| || | |||||| |||| | Sbjct 7395 TTTA---TCTGCTGTAACAAACATATTTAAAGCAATTGAAGCTAAATTACAAACAGCTAT 7339 Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 ||||| | | || || | |||||| || |||| || || ||||||||||| Sbjct 7338 TTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATTACTACATTTAATGGTGCC 7279 Query 118799 CAAGTTCTTTTGATTTGACTTTGTG--TTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 | ||| | |||||| ||||| | ||||||||||| || || | ||| ||||| || Sbjct 7278 AATGTTTTGTTGATT--ACTTTTTCGATTACACGCATCTTTATATAACATATATGGAGTA 7221 Query 118857 CCCGTCTC 118864 || || || Sbjct 7220 CCAGTTTC 7213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617404778730640