Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq69808 215 6e-51 >seq69808 Length=9325 Score = 215 bits (238), Expect = 6e-51 Identities = 589/889 (66%), Gaps = 15/889 (2%) Strand=Plus/Plus Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776 |||||||||||| | || ||||| | ||||| | || |||||||| | | ||| Sbjct 7015 TGGATTCCAGATTTATTTATGAAACGTGTTGAAGCTGATGATAATTGGTCATTAATGTGT 7074 Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836 ||| | || |||||| | | ||| |||||| | ||||| ||||| | Sbjct 7075 CCACATAAATGTCCTGGTTTATTTAATGTATGGGGTGAAAAATTTGATCAACTTTATATT 7134 Query 104837 AAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCT-GCCGATGTGTGGAAAGC 104895 || || || | |||||||| || | | || | ||| | || | ||| || Sbjct 7135 AAATATGAAAATGAAGGTCGTGCTAATAAAACAATTAAAGCACGTTCAT-TATGGTTTGC 7193 Query 104896 TATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAA 104955 ||| | | |||||| || |||||||| ||||| ||| | || ||||| || ||||| Sbjct 7194 TATAATTGAATCTCAAGTTGAAACTGGTACTCCATATATGTTATATAAAGATGCGTGTAA 7253 Query 104956 CCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAAT 105015 | ||| ||||||||| | || | || || || || ||||| ||||||||||| Sbjct 7254 TCGAAAAAGTAATCAACAAAACATTGGCACCATTAAATGTAGTAATCTGTGTACAGAAAT 7313 Query 105016 CTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC 105075 | |||| | ||| |||||| | ||||| ||||| | || ||||| ||| | Sbjct 7314 TGTTGAATATTCAGCACCAGATGAAATAGCTGTTTGTAATTTAGCTTCAATTGCTTT--- 7370 Query 105076 CAAGTATG-TGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG 105133 || |||| | | | ||| ||| ||| | || ||||| | ||||||| | |||||||| Sbjct 7371 -AAATATGTTTGTTACAGCAGATAAA-AAATATGATTTTAAAAAACTTAAAGAAGTTACA 7428 Query 105134 AAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGAC 105192 |||| ||| || | ||| | || | | ||||||||| |||| ||| || | ||| Sbjct 7429 AAAATTGTTACAAGAAATTTGAATAAAATTATTGATATTAATTATTATCCTTTACCAGA- 7487 Query 105193 TGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA 105252 || ||||| ||| | | || || ||||||||| | || || || || | || || Sbjct 7488 AGCAAAAAAATCAAATTTTCGTCATCGACCAATTGGTATTGGCGTACAAGGCTTAGCTGA 7547 Query 105253 TGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCG 105312 || ||| ||| | || || ||| ||| || ||||| || || | ||| | Sbjct 7548 TGCATTTATTTTAATGCGTTACCCATATGAAAGTGAAGAAGCACAGAAATTAAATCAACA 7607 Query 105313 CATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGA 105372 |||||||| || || ||| | | || | ||||| |||| || || || || | | Sbjct 7608 AATATTTGAAACAATTTATTATGGTGCATTAGAGGCTAGTTGCGAATTAGCTGAATTATA 7667 Query 105373 TGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATAT 105432 |||| |||||||||| | ||| || || |||| | ||||| | ||||||| |||||| Sbjct 7668 TGGTTCATATGAAACATATGATGGATCACCAGTTAGCCAAGGTATACTTCAATATGATAT 7727 Query 105433 GTGGGAAGGTGAGACCAAGCTTCACTACG--ACTGGGAAGCTCTCAAGGAACGCATCAAG 105490 || |||| | ||||| || ||| | | ||| | | || || ||| || || Sbjct 7728 GT-GGAATAAAACACCAA-CTGATCTATGGAATTGGAATGAACTTAAAGAAAAAATTAAA 7785 Query 105491 GAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAA 105550 | | ||| | || || | | | || || |||||||||||||| || || |||||| Sbjct 7786 CAACATGGTATCCGAAATTCTTTGTTAATTGCACCAATGCCAACAGCATCAACAGCACAA 7845 Query 105551 ATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATC 105599 || || |||||||| |||| ||||| || || || | || ||||||| Sbjct 7846 ATTTTAGGTAATAACGAATCATTTGAGCCTTATACATCAAATATCTATC 7894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582288985436560