Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 215 6e-51
>seq69808
Length=9325
Score = 215 bits (238), Expect = 6e-51
Identities = 589/889 (66%), Gaps = 15/889 (2%)
Strand=Plus/Plus
Query 104717 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 104776
|||||||||||| | || ||||| | ||||| | || |||||||| | | |||
Sbjct 7015 TGGATTCCAGATTTATTTATGAAACGTGTTGAAGCTGATGATAATTGGTCATTAATGTGT 7074
Query 104777 CCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACA 104836
||| | || |||||| | | ||| |||||| | ||||| ||||| |
Sbjct 7075 CCACATAAATGTCCTGGTTTATTTAATGTATGGGGTGAAAAATTTGATCAACTTTATATT 7134
Query 104837 AAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCT-GCCGATGTGTGGAAAGC 104895
|| || || | |||||||| || | | || | ||| | || | ||| ||
Sbjct 7135 AAATATGAAAATGAAGGTCGTGCTAATAAAACAATTAAAGCACGTTCAT-TATGGTTTGC 7193
Query 104896 TATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAA 104955
||| | | |||||| || |||||||| ||||| ||| | || ||||| || |||||
Sbjct 7194 TATAATTGAATCTCAAGTTGAAACTGGTACTCCATATATGTTATATAAAGATGCGTGTAA 7253
Query 104956 CCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAAT 105015
| ||| ||||||||| | || | || || || || ||||| |||||||||||
Sbjct 7254 TCGAAAAAGTAATCAACAAAACATTGGCACCATTAAATGTAGTAATCTGTGTACAGAAAT 7313
Query 105016 CTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC 105075
| |||| | ||| |||||| | ||||| ||||| | || ||||| ||| |
Sbjct 7314 TGTTGAATATTCAGCACCAGATGAAATAGCTGTTTGTAATTTAGCTTCAATTGCTTT--- 7370
Query 105076 CAAGTATG-TGGATCCAG-AGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACG 105133
|| |||| | | | ||| ||| ||| | || ||||| | ||||||| | ||||||||
Sbjct 7371 -AAATATGTTTGTTACAGCAGATAAA-AAATATGATTTTAAAAAACTTAAAGAAGTTACA 7428
Query 105134 AAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGAC 105192
|||| ||| || | ||| | || | | ||||||||| |||| ||| || | |||
Sbjct 7429 AAAATTGTTACAAGAAATTTGAATAAAATTATTGATATTAATTATTATCCTTTACCAGA- 7487
Query 105193 TGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGA 105252
|| ||||| ||| | | || || ||||||||| | || || || || | || ||
Sbjct 7488 AGCAAAAAAATCAAATTTTCGTCATCGACCAATTGGTATTGGCGTACAAGGCTTAGCTGA 7547
Query 105253 TGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCG 105312
|| ||| ||| | || || ||| ||| || ||||| || || | ||| |
Sbjct 7548 TGCATTTATTTTAATGCGTTACCCATATGAAAGTGAAGAAGCACAGAAATTAAATCAACA 7607
Query 105313 CATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGA 105372
|||||||| || || ||| | | || | ||||| |||| || || || || | |
Sbjct 7608 AATATTTGAAACAATTTATTATGGTGCATTAGAGGCTAGTTGCGAATTAGCTGAATTATA 7667
Query 105373 TGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATAT 105432
|||| |||||||||| | ||| || || |||| | ||||| | ||||||| ||||||
Sbjct 7668 TGGTTCATATGAAACATATGATGGATCACCAGTTAGCCAAGGTATACTTCAATATGATAT 7727
Query 105433 GTGGGAAGGTGAGACCAAGCTTCACTACG--ACTGGGAAGCTCTCAAGGAACGCATCAAG 105490
|| |||| | ||||| || ||| | | ||| | | || || ||| || ||
Sbjct 7728 GT-GGAATAAAACACCAA-CTGATCTATGGAATTGGAATGAACTTAAAGAAAAAATTAAA 7785
Query 105491 GAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAA 105550
| | ||| | || || | | | || || |||||||||||||| || || ||||||
Sbjct 7786 CAACATGGTATCCGAAATTCTTTGTTAATTGCACCAATGCCAACAGCATCAACAGCACAA 7845
Query 105551 ATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATC 105599
|| || |||||||| |||| ||||| || || || | || |||||||
Sbjct 7846 ATTTTAGGTAATAACGAATCATTTGAGCCTTATACATCAAATATCTATC 7894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582288985436560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |