Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq21713 170 1e-37 >seq21713 Length=22343 Score = 170 bits (188), Expect = 1e-37 Identities = 234/327 (72%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 111609 CAATTCAAAGTCATCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAG 111668 || |||||| |||||| | |||||| || ||||| ||||| ||||||| || | || Sbjct 18157 CATTTCAAAATCATCAAAAGTAAAATCTTCTATGCATTCAACTTTTCGTTTTATAATGAG 18216 Query 111669 TTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAA 111728 |||||||| || ||| || | | || || || |||| || |||||||| Sbjct 18217 CTTTGGAAAAGGTCGTGGCACACGATTCAATTGCTCTTTTAGCGGCTCAATATGATTTAA 18276 Query 111729 ATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTG 111788 ||||||||| ||||| |||| || | || || | ||||| ||| |||||||| Sbjct 18277 ATAAACATGAGCATCGCCTAAGGTGTGCACAAAATCTCCAGGCTTTAAATTTGTGATGTG 18336 Query 111789 TGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCAT 111848 || |||||||| ||||| | | ||||| || || ||||| ||||| || || ||||| Sbjct 18337 AGCTATCATGTAAGTGAGCAAAGCATAACTTGCTATATTAAAAGGCACTCCAAGACCCAT 18396 Query 111849 ATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACA 111908 |||| | ||||||||||| | ||||||||||| || | | ||| ||||||||| Sbjct 18397 ATCTGCTGATCTTTGATACAACTGACATGATAATTCTCCATTAGCCACGTAAAATTGAAT 18456 Query 111909 AAGTACATGACAAGGAGGCAATGCCAT 111935 ||| ||| |||||||| | |||||| Sbjct 18457 AAGACAATGGCAAGGAGGTAGTGCCAT 18483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391308876288922