Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq34035 152 6e-32
seq116239 147 2e-30
seq98857 95.1 1e-14
seq8255 93.3 5e-14
>seq34035
Length=19351
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || || ||||| || ||||| || || |||||||| || | |
Sbjct 10357 ATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCCTCT 10416
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || ||||| || || || || || || ||||||||||| ||
Sbjct 10417 GATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 10476
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| ||||||| |||||||| ||||| ||||||| || ||| || | || |||||
Sbjct 10477 CAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTATAAC 10536
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||||| || || ||| | ||| |||| | || ||||| || ||
Sbjct 10537 ATCCAAAAAGAGTCAACTTTGCATTTAGTACTTCGCCTTCGAGGAGG 10583
>seq116239
Length=11340
Score = 147 bits (162), Expect = 2e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || | || || || || ||||| | ||||||||| |
Sbjct 4779 AATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCCGTC 4720
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | |||| |||| | || || || ||||| |||||||| || ||||| ||||| ||
Sbjct 4719 TGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 4660
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | ||||||||||| |||||| | ||||||| | | || | | || || ||
Sbjct 4659 ACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTACAA 4600
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| |||||||||||||| |||||| | || | ||||| |||||||||
Sbjct 4599 CATTCAAAAGGAATCCACACTTCATTTGGTTCTTCGTCTACGCGGTGGA 4551
>seq98857
Length=3708
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| ||||| | || | || || || || || | ||||| |
Sbjct 776 AATGCAAATCTTTGTTAAGACATTAACTAGAAAAACAATCACCCTCAAAGTTGAACCTTT 717
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| |||| | ||||| || ||||| || |||||||||||||||| ||| ||
Sbjct 716 CGATAGAATTGAAAATATTAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCTAGATCA 657
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| | |||| | | || || || ||| | ||| |||||| | | || || ||
Sbjct 656 ACAAAGATTAATCGTCGAAGGAAAACAGCTCTAAGATAGTCGTACATGATCTGATTACAA 597
Query 27585 TGTCCAAAAGGA 27596
||||||||||
Sbjct 596 CATCCAAAAGGA 585
Score = 86.0 bits (94), Expect = 7e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| || || || || || || |||||||| || |||| |||| |||| | |||||
Sbjct 154 ACTGGAAAAACAATCACCCTCGAGGTTGAACCATCCGATACAATTGAAAATGTTAAGGCA 95
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || || ||||||||||||||||||||||| || || | |||| || | || ||
Sbjct 94 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAACAAAGATTAATCTTCGAAGGAAAA 35
Query 27550 CAACTCGAGGATGATCGTAC 27569
|||||| | ||| ||||||
Sbjct 34 CAACTCTAAGATAGTCGTAC 15
>seq8255
Length=4873
Score = 93.3 bits (102), Expect = 5e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
|| || ||||| || ||| | || || || || || | |||| |||| || ||
Sbjct 391 ACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAAAATGAAAAACCT 450
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
||||||| ||||| || || | || |||||||| |||| | ||||||| ||||| ||
Sbjct 451 AAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTGGCAAA 510
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||| | | |||| ||||||||| || || || | ||||||||||| || |||||
Sbjct 511 CAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAACCCTTCAC 570
Query 27610 CTAGTCTTGCGTCT 27623
| ||| | |||||
Sbjct 571 TTGGTCCTTCGTCT 584
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569360163069280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |