Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq34035 152 6e-32 seq116239 147 2e-30 seq98857 95.1 1e-14 seq8255 93.3 5e-14 >seq34035 Length=19351 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || ||||| || ||||| || || |||||||| || | | Sbjct 10357 ATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCCTCT 10416 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || ||||| || || || || || || ||||||||||| || Sbjct 10417 GATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 10476 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| ||||||| |||||||| ||||| ||||||| || ||| || | || ||||| Sbjct 10477 CAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTATAAC 10536 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || ||| | ||| |||| | || ||||| || || Sbjct 10537 ATCCAAAAAGAGTCAACTTTGCATTTAGTACTTCGCCTTCGAGGAGG 10583 >seq116239 Length=11340 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || | || || || || ||||| | ||||||||| | Sbjct 4779 AATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCCGTC 4720 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| |||| | || || || ||||| |||||||| || ||||| ||||| || Sbjct 4719 TGACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 4660 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | ||||||||||| |||||| | ||||||| | | || | | || || || Sbjct 4659 ACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTACAA 4600 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||||||||||||| |||||| | || | ||||| ||||||||| Sbjct 4599 CATTCAAAAGGAATCCACACTTCATTTGGTTCTTCGTCTACGCGGTGGA 4551 >seq98857 Length=3708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | || | || || || || || | ||||| | Sbjct 776 AATGCAAATCTTTGTTAAGACATTAACTAGAAAAACAATCACCCTCAAAGTTGAACCTTT 717 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| |||| | ||||| || ||||| || |||||||||||||||| ||| || Sbjct 716 CGATAGAATTGAAAATATTAAGGCCAAGATTCAAGATAAGGAGGGAATTCCTCTAGATCA 657 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | |||| | | || || || ||| | ||| |||||| | | || || || Sbjct 656 ACAAAGATTAATCGTCGAAGGAAAACAGCTCTAAGATAGTCGTACATGATCTGATTACAA 597 Query 27585 TGTCCAAAAGGA 27596 |||||||||| Sbjct 596 CATCCAAAAGGA 585 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || || || || || || |||||||| || |||| |||| |||| | ||||| Sbjct 154 ACTGGAAAAACAATCACCCTCGAGGTTGAACCATCCGATACAATTGAAAATGTTAAGGCA 95 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || ||||||||||||||||||||||| || || | |||| || | || || Sbjct 94 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAACAAAGATTAATCTTCGAAGGAAAA 35 Query 27550 CAACTCGAGGATGATCGTAC 27569 |||||| | ||| |||||| Sbjct 34 CAACTCTAAGATAGTCGTAC 15 >seq8255 Length=4873 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || ||| | || || || || || | |||| |||| || || Sbjct 391 ACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAAAATGAAAAACCT 450 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||| ||||| || || | || |||||||| |||| | ||||||| ||||| || Sbjct 451 AAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTGGCAAA 510 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||| | | |||| ||||||||| || || || | ||||||||||| || ||||| Sbjct 511 CAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAACCCTTCAC 570 Query 27610 CTAGTCTTGCGTCT 27623 | ||| | ||||| Sbjct 571 TTGGTCCTTCGTCT 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569360163069280