Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq116239 127 1e-24 seq34035 107 1e-18 seq8255 84.2 1e-11 >seq116239 Length=11340 Score = 127 bits (140), Expect = 1e-24 Identities = 164/224 (73%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| || ||| |||||||||||||| ||||| || | ||| | Sbjct 4561 AGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTA 4620 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | ||| || || ||||| || ||||| ||||| || || || | || ||| Sbjct 4621 CCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCC 4680 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| |||| |||||| | ||||||||| ||| || |||| || Sbjct 4681 TTGTCT-TGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGT 4739 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || ||||| || ||||| ||||| |||||||||||||| |||| Sbjct 4740 AATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTTGA 4783 >seq34035 Length=19351 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | || ||||| | ||| ||| ||||| ||||||||||| || Sbjct 10583 CCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGAT 10524 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | || |||||||||||||| || || |||||||| ||||| || || || Sbjct 10523 AAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGA 10464 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| |||| || | |||||| | |||||| || | || || Sbjct 10463 ATACCTTCTTTATCTTGGATC-TTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||||| || || || || | ||||| ||||| |||||||| || Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354 >seq8255 Length=4873 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || |||||||||||||| ||||| | || || || Sbjct 584 AGACGAAGGACCAAGTGAAGGGTTGATTCCTTTTGAATGTTGTAATCGAAGAGGGTACGA 525 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | |||| | |||||| || || || |||||| |||||||||| || || |||| || Sbjct 524 CCATCTTTCAATTGTTTGCCAGCGAAAATTAAATGCTGTTGGTCTGGTGGGACTCTTTCT 465 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCACTTCCACGGT 34667 |||||| || || ||||| | ||| |||||| | | | || ||||||| || Sbjct 464 TTGTCTAGAATTTTAGGTTTTTCATTTTTAATGGTGTCTGTTGGT-TCGACTTCCAAAGT 406 Query 34668 TATCGTTTTACCGGTTAA 34685 || || ||||| || || Sbjct 405 GATGGTCTTACCAGTCAA 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314218315273502