Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq116239 167 2e-36 seq34035 138 1e-27 seq8255 131 1e-25 seq3775 102 7e-17 seq82763 96.9 3e-15 >seq116239 Length=11340 Score = 167 bits (184), Expect = 2e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||||||| | || || || | ||||| | || || || ||||| Sbjct 4778 ATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCCGTCT 4719 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||| ||||||||||| |||||||| ||||| |||||| Sbjct 4718 GACACAATTGAAAATGTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAA 4659 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || || || |||||||| || || ||| | || ||||||||| Sbjct 4658 CAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATTACAAC 4599 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | ||||||||| | ||| | || ||||| || Sbjct 4598 ATTCAAAAGGAATCCACACTTCATTTGGTTCTTCGTCTACGCGGTGGAAT 4549 >seq34035 Length=19351 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| |||||||| || || ||| | || || ||||| || ||||| || Sbjct 10357 ATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCCTCT 10416 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| || || ||||| |||||||| || || || |||||| Sbjct 10417 GATACAATTGAAAATGTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 10476 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || |||||||| | ||| || |||||| | || || | ||| | || ||||| ||| Sbjct 10477 CAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTATAAC 10536 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||| ||||| || || ||||| || Sbjct 10537 ATCCAAAAAGAGTCAACTTTGCATTTAGT 10565 >seq8255 Length=4873 Score = 131 bits (144), Expect = 1e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || ||| | || ||| | ||||| ||||| | ||| | ||| | | | |||| Sbjct 389 TGACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAAAATGAAAAAC 448 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 ||||||| |||||||||| | | ||||| || ||||||| |||||| | ||| |||| Sbjct 449 CTAAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTGGCA 508 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 |||||||| |||| || ||| | | ||||||||||||||||||||| || ||| | | Sbjct 509 AACAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAACCCTTC 568 Query 27190 ATTTGGT 27196 | ||||| Sbjct 569 ACTTGGT 575 >seq3775 Length=22988 Score = 102 bits (112), Expect = 7e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 49780 GGACTAGAAGGTTTGGTACTAAAACCGATCAATTCTGTATACGCACCCGGTAAAAGACAT 49839 ||| ||||||| || ||||| ||| || || ||| ||| || |||||| | Sbjct 6722 GGATTAGAAGGATTAGTACTGAAAAATATTAAAAGCCAATATCAACCAGGAAAAAGAGGT 6663 Query 49840 TGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGCCATGGCCGATAGCGTTGATTTG 49899 ||||| |||||||| ||||| || | | || || ||||| |||| | ||||||| Sbjct 6662 TGGTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACAAATGGCAGATACTGCTGATTTG 6603 Query 49900 GTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGGTGGCTTCTTGTCTACATTTTTG 49959 || || || || |||||||| ||| | || ||||| |||||| | || || ||| || Sbjct 6602 GTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAAGGTGGCATGTTAAGTATATTCTTA 6543 Query 49960 ATGGGATGTCTCGACACAAACCGAAACGTTTGGACGACAGTAACAAAGGTGCACACAGG 50018 ||||||||| || | || ||| | |||| ||||||||||| || || |||| Sbjct 6542 ATGGGATGTTATGATTCTAAAACAAATATATGGAAAACAGTAACAAAAGTTCATTCAGG 6484 >seq82763 Length=7752 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 135505 AGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTC 135564 |||||| |||||||| || ||| | | ||||||||||| || || || || |||||| | Sbjct 4199 AGAAGGAAAAATGCATGGTTTTTTAAGAATGTATTGGGCTAAGAAAATTTTAGAATGGAC 4258 Query 135565 TGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGA 135624 || ||| |||| | | || || || ||||| | ||| |||||| | || ||| | || Sbjct 4259 TGAATCACCTGAAAAAGCATTAGAAATTGCAATTTATTTGAATGATAAATATAGTCTTGA 4318 Query 135625 TGGACGCGATTCAAATGG 135642 |||||| ||| ||||||| Sbjct 4319 TGGACGTGATCCAAATGG 4336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434193749834880