Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq111833 129 7e-25 >seq111833 Length=3756 Score = 129 bits (142), Expect = 7e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 16938 ATCAACGCCGATTTGGTCTATAATGTCGATCAGAACGAAGTTCCTATGGTAACAACTCGC 16997 ||||| |||||| | | ||| |||| | | || || ||||| || | || ||||| Sbjct 1780 ATCAATGCCGATCTTGAATATGATGTGGGCAATAATCAATTTCCTTTGATTACGACTCGT 1721 Query 16998 AAAACATTTTATCGCGGCGCTATTGCTGAACTGCTTGGATATCTACGAGGATACGACAAT 17057 |||| ||||| | || |||||||| || ||||| || || || || || || || Sbjct 1720 AAAAGCTTTTACAAAGCTGCAATTGCTGAGCTTCTTGGGTACCTTCGTGGCTATGATAAC 1661 Query 17058 GCTGCCGATTTTCGAGCCATAGGTTGTAACACATGGAATGCTAACGCCAACGAAAACGAA 17117 || ||| | ||||| | || ||||| || |||||||| || || || || |||||| || Sbjct 1660 GCAGCCCAGTTTCGTGAAATTGGTTGCAATACATGGAACGCCAATGCGAATGAAAACCAA 1601 Query 17118 GCTTGGTTGAAGAATCCCAATCGTAAAGGTGAGGACGATATGGG 17161 || ||| | || |||||| ||||||||||||| || || ||||| Sbjct 1600 GCATGGATAAAAAATCCCCATCGTAAAGGTGAAGATGACATGGG 1557 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/283 (68%), Gaps = 11/283 (4%) Strand=Plus/Minus Query 17414 TTTCAATCAGATTCAGTGTTTTGTCTTGCTCAAACTGATGGCTCAAATTACAGGATTAAA 17473 ||| ||||| ||||||| ||||| || || || ||||| | |||||| || || Sbjct 1104 TTTTAATCAAGTTCAGTGCTTTGTGTTACTTGCTCTAATGGCACGAATTACGGGGCATAA 1045 Query 17474 ACCTGGAAAGGCTTATCATAAAATTGTAAATGTTCACATTTACGATAATCAGTACGAGGT 17533 | | || ||||| |||||||||||||| |||| || ||||| || ||||| | | Sbjct 1044 AGCAGGTAAGGCCTATCATAAAATTGTGAATGCACATATTTATGAAAATCAAT---TGCC 988 Query 17534 GTTGATGAAGGAAGGACAACTAAACAGAGTTCCATTTAAAGCACCGAC--CATGTGG--A 17589 || ||| || | || ||||| ||| || ||| ||| || | ||| ||| | Sbjct 987 TTTAATGCGTGATGTCCAGCTAAAACGAGAGCCTTTT---GCATCGCCTTCAT-TGGTTA 932 Query 17590 TTAATCCAGAAATTAAAACTTTAGAAGATGTTTTAACGTGGGTTACTCCTGATGATTTTG 17649 | ||||| ||||||| | | |||||| || ||||||||| || | ||||| ||| Sbjct 931 TCAATCCTCAAATTAAGTCACTGGAAGATCTTGAAACGTGGGTAACGACAGATGACTTTA 872 Query 17650 TAGTCGAAGGCTATGAACATCATCCTGCAATCAAATATCCTTT 17692 | ||||| ||| | ||| || |||||||| ||||| Sbjct 871 CCCTTGAAGGGTATCAGTGCCATGAAGCTATCAAATACCCTTT 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581765059845200