Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_029100.1 Length=33399 Score E Sequences producing significant alignments: (Bits) Value seq38242 82.4 2e-11 >seq38242 Length=2084 Score = 82.4 bits (90), Expect = 2e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 11936 AGGATTGAAGCTCACCCATATTTCTGAGCCTTCTTTACGAATAGTAGGTTTTAATATATC 11995 |||||| ||||| ||||||||||| || |||||||||||||||| |||| ||||| Sbjct 1967 AGGATTAAAGCTGACCCATATTTCAGAATTAGCTTTACGAATAGTAGGGATTAAAATATC 2026 Query 11996 CCACTGCTCTTTTGTTAGGTTATGAGCTTCCTCTATCCATAGGATATCGGCACCCTCA 12053 ||| |||||| |||| | ||||||||||| ||| ||||| ||||||| Sbjct 2027 CCAAGACTCTTTAGTTACAGCCTCAGCTTCCTCTACCCAACAAATATCTATACCCTCA 2084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106586220796908