Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq21713 170 2e-37 >seq21713 Length=22343 Score = 170 bits (188), Expect = 2e-37 Identities = 512/781 (66%), Gaps = 22/781 (3%) Strand=Plus/Plus Query 118357 TTGTAGTTTTCCAAAATAAAATCTTCAAACTTAAAGTCTTCTATATTTTTGA-TATCCTT 118415 ||||||| || || |||||| ||||| |||| |||||||| || | | | | | Sbjct 18146 TTGTAGTCTTGCATTTCAAAATCATCAAAAGTAAAATCTTCTATGCATTCAACTTTTCGT 18205 Query 118416 GTTTATGGATAGTGTGGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTC 118475 ||||| || | ||||| || | ||| | | | | ||| ||| || ||||| Sbjct 18206 -TTTATAATGAGCTTTGGAAAAGGTCGTGGCACACGATTCAATTGCTCTTTTAGCGGCTC 18264 Query 118476 AATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAG 118535 ||| ||||| | ||| ||||||||||| || | || || | || || ||||| | | Sbjct 18265 AATATGATTTAAATAAACATGAGCATCGCCTAAGGTGTGCACAAAATCTCCAGGCTTTAA 18324 Query 118536 CCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAAC 118595 ||| | |||||| |||||||| || | |||| || || |||| ||||||||| || Sbjct 18325 ATTTGTGATGTGAGCTATCATGTAAGTGAGCAAAGCATAACTTGCTATATTAAAAGGCAC 18384 Query 118596 ACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAAC 118655 || |||||||| ||||||||||| || ||||| || || || | || || || || || Sbjct 18385 TCCAAGACCCATATCTGCTGATCTTTGATACAACTGACATGATAATTCTCCATTAGCCAC 18444 Query 118656 ATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGGATT 118715 ||||| ||| | | || || ||||| || |||| | | | | ||||| Sbjct 18445 GTAAAATTGAATAAGACAATGGCAAGGAGGTAGTGCCATTTTAGGAATGTCGATTGGATT 18504 Query 118716 CCAGGCTGTTAAAACATGCCTTCTGCTATATGGTTCTACCTGTATACCCTCAATTAAATT 118775 ||| || || | || | | ||| || ||| | | || ||| || | | Sbjct 18505 CCAAGCGGTCATAATAATTCGTCTATCATTTGGATTGGTGTTAATTTGCTCGATGACTTG 18564 Query 118776 CTGAATCTGATCCACACCCTTTCCA--GTA--TACTGAGACTCGCATCCTTTATATTCTG 118831 || | ||||| | |||| |||| ||| ||||| || ||| ||||||||||| Sbjct 18565 CTTTAATTGATCAATTCCCTGTCCATCGTAATTACTGTGA----CATGTTTTATATTCTG 18620 Query 118832 CCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCC-----CTGGGACCT 118886 |||| || ||||||||||||||||| ||||| |||| ||| || || | ||| Sbjct 18621 CCCCTAAGTGCCTCCATTGAAAACCATATACAGGGCCCAAATCGCCAACTTCTCGATCCT 18680 Query 118887 AAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAAT-AGCAA 118945 ||||| | | || ||| | |||||| | | | ||| ||| |||||| | | Sbjct 18681 CAAATC----CTGATTTATCTAAG-AATTCTCTGGTGCTATTTCCATCCCAAATGTGGAT 18735 Query 118946 CTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCT 119005 | |||| ||| || |||| | ||| |||| | ||||||||| | || | Sbjct 18736 ATTTTTTTCTTG-TAGCAGCTTAGCATCTGTGCTGCCACGAATAAACCAAAGTAATTCTT 18794 Query 119006 CAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAACTGACCTCTAAGTG 119065 | |||| | | ||||||||| ||||||||| || | ||| || | | | || Sbjct 18795 CTGCAACTGCACGCCAAAAAACACGTTTTGTTGTTAATAATGGGAAGCTATCGCGTAGAT 18854 Query 119066 AATATCTTGTTTGTGTTCCAAAAATAGACAGAGTCCCAACACCTGTTCTATCATCTCTCT 119125 | |||| |||||| |||||| | || | || ||||| ||||||| ||||| ||| | Sbjct 18855 TAAATCTCATTTGTGCTCCAAACAAGGATACGGTTCCAACTCCTGTTCGATCATTTCTTT 18914 Query 119126 T 119126 | Sbjct 18915 T 18915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413803473889816