Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq34035 114 9e-21 seq116239 98.7 7e-16 >seq34035 Length=19351 Score = 114 bits (126), Expect = 9e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || ||||| ||||||||||| ||||| || ||| |||| |||||| | Sbjct 10354 AATATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCC 10413 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | || | || | ||| || ||| || || || ||||||||| |||| | Sbjct 10414 TCTGATACAATTGAAAAT--GTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAG 10471 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| |||||||| || || |||||| | || || | ||| | ||| || |||| Sbjct 10472 ATCAACAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATT 10531 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | ||||||||||||||| ||||||||||| || Sbjct 10532 ATAACATCCAAAAAGAGTCAACTTTGCATTTAGT 10565 >seq116239 Length=11340 Score = 98.7 bits (108), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| |||||||| |||||| | ||||| ||| |||||| | || || || Sbjct 4781 AAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCCG 4722 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| || ||| ||| || ||||| ||||| |||| | Sbjct 4721 TCTGACACAATTGAAAAT--GTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAG 4664 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || |||||||| ||||| |||||||| || | | | ||||| |||| Sbjct 4663 ATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATT 4604 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || ||| | ||||||||| | ||| | || || || Sbjct 4603 ACAACATTCAAAAGGAATCCACACTTCATTTGGTTCTTCGTCTACGCGGTGG 4552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355284294191538