Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq34035 114 9e-21
seq116239 98.7 7e-16
>seq34035
Length=19351
Score = 114 bits (126), Expect = 9e-21
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| || ||||| ||||||||||| ||||| || ||| |||| |||||| |
Sbjct 10354 AATATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCC 10413
Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| || | || | ||| || ||| || || || ||||||||| |||| |
Sbjct 10414 TCTGATACAATTGAAAAT--GTTAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAG 10471
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| |||||||| || || |||||| | || || | ||| | ||| || ||||
Sbjct 10472 ATCAACAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATT 10531
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998
| ||||||||||||||| ||||||||||| ||
Sbjct 10532 ATAACATCCAAAAAGAGTCAACTTTGCATTTAGT 10565
>seq116239
Length=11340
Score = 98.7 bits (108), Expect = 7e-16
Identities = 162/232 (70%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|||||||| |||||||| |||||| | ||||| ||| |||||| | || || ||
Sbjct 4781 AAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGAGCCG 4722
Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| ||| || | ||| || ||| ||| || ||||| ||||| |||| |
Sbjct 4721 TCTGACACAATTGAAAAT--GTTAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAG 4664
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| || |||||||| ||||| |||||||| || | | | ||||| ||||
Sbjct 4663 ATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGGATT 4604
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| ||||| || ||| | ||||||||| | ||| | || || ||
Sbjct 4603 ACAACATTCAAAAGGAATCCACACTTCATTTGGTTCTTCGTCTACGCGGTGG 4552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355284294191538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |