Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq34035 152 1e-31 seq116239 150 4e-31 seq98857 98.7 2e-15 >seq34035 Length=19351 Score = 152 bits (168), Expect = 1e-31 Identities = 168/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | || | ||| ||||||||||||||||||||||| | | ||| Sbjct 10577 CGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTT 10518 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||| || || || || || ||||| || | |||||||| || ||||||| ||| Sbjct 10517 CGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCT 10458 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || |||||||| ||| || ||||| || || |||||| ||| ||||| || Sbjct 10457 TCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGT 10398 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| || ||||| | |||||| || Sbjct 10397 GTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354 >seq116239 Length=11340 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| ||||| || ||||| ||||| ||||||| | ||||| ||||| |||| ||| Sbjct 4576 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCCAATTGC 4635 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || | |||||||| || || |||| ||||||||||| || |||||| Sbjct 4636 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTT 4695 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| || ||||| || |||||||| |||||||| | || || || ||||| || Sbjct 4696 GCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTTCCAGTT 4755 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 | ||| |||||||| | ||||||||| Sbjct 4756 AAAGTTTTTACAAAAATCTGCATTTT 4781 >seq98857 Length=3708 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| || || || ||| ||||||| | | |||||| || ||||||| ||| ||||| Sbjct 23 ATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGATCTGGAGGAATTCCCTCCTT 82 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||||||| || || ||||| || || || || |||||||||||| ||||| Sbjct 83 GTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGATGGTTCAACCTCGAGGGTGAT 142 Query 211079 CGTCTTTCCCGT 211090 || ||||| || Sbjct 143 TGTTTTTCCAGT 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157172366164310