Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq34035 152 1e-31
seq116239 150 4e-31
seq98857 98.7 2e-15
>seq34035
Length=19351
Score = 152 bits (168), Expect = 1e-31
Identities = 168/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || | || | ||| ||||||||||||||||||||||| | | |||
Sbjct 10577 CGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTT 10518
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| |||||| || || || || || ||||| || | |||||||| || ||||||| |||
Sbjct 10517 CGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCT 10458
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|| || || |||||||| ||| || ||||| || || |||||| ||| ||||| ||
Sbjct 10457 TCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGT 10398
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| || || ||||| || ||||| | |||||| ||
Sbjct 10397 GTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354
>seq116239
Length=11340
Score = 150 bits (166), Expect = 4e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
||||| ||||| || ||||| ||||| ||||||| | ||||| ||||| |||| |||
Sbjct 4576 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCCAATTGC 4635
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || || || | |||||||| || || |||| ||||||||||| || ||||||
Sbjct 4636 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTT 4695
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
||| || ||||| || |||||||| |||||||| | || || || ||||| ||
Sbjct 4696 GCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTTCCAGTT 4755
Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117
| ||| |||||||| | |||||||||
Sbjct 4756 AAAGTTTTTACAAAAATCTGCATTTT 4781
>seq98857
Length=3708
Score = 98.7 bits (108), Expect = 2e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018
||||| || || || ||| ||||||| | | |||||| || ||||||| ||| |||||
Sbjct 23 ATCTTAGAGTTGTTTTCCTTCGAAGATTAATCTTTGTTGATCTGGAGGAATTCCCTCCTT 82
Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078
||| ||||||||| || || ||||| || || || || |||||||||||| |||||
Sbjct 83 GTCTTGGATCTTTGCCTTAACATTTTCAATTGTATCGGATGGTTCAACCTCGAGGGTGAT 142
Query 211079 CGTCTTTCCCGT 211090
|| ||||| ||
Sbjct 143 TGTTTTTCCAGT 154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1157172366164310
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |