Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq34035 134 9e-27
seq116239 129 4e-25
seq8255 100 2e-16
>seq34035
Length=19351
Score = 134 bits (148), Expect = 9e-27
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || |||||||| || || || || || || || || || || || ||
Sbjct 10354 AATATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCC 10413
Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| || || |||||| | ||||| | || | | || ||||||||| | || |||||
Sbjct 10414 TCTGATACAATTGAAAATGTTAAAGCTAAGA-TCCAAGATAAAGAAGGTATTCCTCCAGA 10472
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|||||| |||||||| || || || |||||||| || || | ||| || ||| |||||
Sbjct 10473 TCAACAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTA 10532
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||||| ||||||||||| || || |||||||| | | | ||||||||
Sbjct 10533 TAACATCCAAAAAGAGTCAACTTTGCATTTAGTACTTCGCCTTCGAGGAGG 10583
>seq116239
Length=11340
Score = 129 bits (142), Expect = 4e-25
Identities = 161/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 23604 ACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGA 23663
||| |||||||||||||| || ||||| | || |||||||| || || | || |||||
Sbjct 4785 ACTCAAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGA 4726
Query 23664 CTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGC 23722
| | ||||| |||||| | ||||| |||| | || ||||| ||||| | || |
Sbjct 4725 GCCGTCTGACACAATTGAAAATGTTAAAGCAAAGA-TTCAAGACAAGGAAGGCATTCCAC 4667
Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCG 23782
|||||||||| ||||| || ||||| || || ||| |||| || | | || || |
Sbjct 4666 CAGATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGG 4607
Query 23783 ATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||||||||| ||||| || |||||| | ||||| |||
Sbjct 4606 ATTACAACATTCAAAAGGAATCCACACTTCATTTGGTT 4569
>seq8255
Length=4873
Score = 100 bits (110), Expect = 2e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694
|| || || || |||||| | ||||| || | || ||||| || ||| |||||
Sbjct 391 ACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAAAATGAAAAACCT 450
Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754
|||||| ||||||||| | || || ||||| ||||||| |||||| || || ||||||
Sbjct 451 AAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTGGCAAA 510
Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
||| || |||| | || || | |||||||||||| ||||| || || ||
Sbjct 511 CAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAAC 563
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337460496433352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |