Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq34035 134 9e-27 seq116239 129 4e-25 seq8255 100 2e-16 >seq34035 Length=19351 Score = 134 bits (148), Expect = 9e-27 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || |||||||| || || || || || || || || || || || || Sbjct 10354 AATATGCAGATATTTGTTAAAACTCTTACAGGGAAGACCATAACACTTGAGGTCGAACCC 10413 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || |||||| | ||||| | || | | || ||||||||| | || ||||| Sbjct 10414 TCTGATACAATTGAAAATGTTAAAGCTAAGA-TCCAAGATAAAGAAGGTATTCCTCCAGA 10472 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 |||||| |||||||| || || || |||||||| || || | ||| || ||| ||||| Sbjct 10473 TCAACAACGTTTAATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCTTATCTGATTA 10532 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||||||||| || || |||||||| | | | |||||||| Sbjct 10533 TAACATCCAAAAAGAGTCAACTTTGCATTTAGTACTTCGCCTTCGAGGAGG 10583 >seq116239 Length=11340 Score = 129 bits (142), Expect = 4e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 23604 ACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGA 23663 ||| |||||||||||||| || ||||| | || |||||||| || || | || ||||| Sbjct 4785 ACTCAAAATGCAGATTTTTGTAAAAACTTTAACTGGAAAAACAATTACATTGGAGGTTGA 4726 Query 23664 CTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGC 23722 | | ||||| |||||| | ||||| |||| | || ||||| ||||| | || | Sbjct 4725 GCCGTCTGACACAATTGAAAATGTTAAAGCAAAGA-TTCAAGACAAGGAAGGCATTCCAC 4667 Query 23723 CAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCG 23782 |||||||||| ||||| || ||||| || || ||| |||| || | | || || | Sbjct 4666 CAGATCAACAACGTTTGATTTTTGCTGGAAAGCAATTGGAGGATGGTAGGACATTGTCGG 4607 Query 23783 ATTACAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||||||| ||||| || |||||| | ||||| ||| Sbjct 4606 ATTACAACATTCAAAAGGAATCCACACTTCATTTGGTT 4569 >seq8255 Length=4873 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || || || |||||| | ||||| || | || ||||| || ||| ||||| Sbjct 391 ACTGGTAAGACCATCACTTTGGAAGTCGAACCAACAGACACCATTAAAAATGAAAAACCT 450 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| ||||||||| | || || ||||| ||||||| |||||| || || |||||| Sbjct 451 AAAATTCTAGACAAAGAAAGAGTCCCACCAGACCAACAGCATTTAATTTTCGCTGGCAAA 510 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||| || |||| | || || | |||||||||||| ||||| || || || Sbjct 511 CAATTGAAAGATGGTCGTACCCTCTTCGATTACAACATTCAAAAGGAATCAAC 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337460496433352