Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq116239 132 1e-25 seq109298 131 4e-25 seq94460 131 4e-25 seq34035 116 9e-21 seq55403 100 7e-16 seq101420 95.1 3e-14 seq77789 95.1 3e-14 seq56497 95.1 3e-14 seq11085 95.1 3e-14 seq41759 86.0 1e-11 seq28165 86.0 1e-11 >seq116239 Length=11340 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| ||||| | |||||||| | ||| || || ||||| || | ||| Sbjct 4576 TGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCCTCCAATTGC 4635 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | |||||||| || || ||||| |||||||||||||| |||||| Sbjct 4636 TTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTT 4695 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 || ||| ||| || ||||| || | || || || || || || || || || || Sbjct 4696 GCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTGTTTTTCCAGTT 4755 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 |||||||||| || | |||||||| Sbjct 4756 AAAGTTTTTACAAAAATCTGCATTTT 4781 >seq109298 Length=1554 Score = 131 bits (144), Expect = 4e-25 Identities = 132/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | |||||||| ||| | || || || |||||||| || ||||||||| | || || Sbjct 548 CCAAATCTACAACGTAATTGTAACCGCTCACGCCTTTGTAATAATTTTCTTTATAGTGAT 607 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || |||||||||||||| || ||| |||| | || |||||||| Sbjct 608 ACCAATTATAATTGGAGGGTTCGGAAATTGATTAGTGCCTCTAATACTCGGAGCTCCTGA 667 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 ||| || ||||| | | ||||||||||| || ||| |||| || || ||| Sbjct 668 TATAGCATTTCCTCGAATAAACAATATAAGCTTCTGAATACTTCCTCCATCC 719 >seq94460 Length=1510 Score = 131 bits (144), Expect = 4e-25 Identities = 132/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | |||||||| ||| | || || || |||||||| || ||||||||| | || || Sbjct 1067 CCAAATCTACAACGTAATTGTAACCGCTCACGCCTTTGTAATAATTTTCTTTATAGTGAT 1008 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || |||||||||||||| || ||| |||| | || |||||||| Sbjct 1007 ACCAATTATAATTGGAGGGTTCGGAAATTGATTAGTGCCTCTAATACTCGGAGCTCCTGA 948 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 ||| || ||||| | | ||||||||||| || ||| |||| || || ||| Sbjct 947 TATAGCATTTCCTCGAATAAACAATATAAGCTTCTGAATACTTCCTCCATCC 896 >seq34035 Length=19351 Score = 116 bits (128), Expect = 9e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | || | ||| || |||||||||| || ||||| | || ||| Sbjct 10577 CGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGATAAGGTT 10518 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || || || |||||||| || | |||||||| || || ||||||||| Sbjct 10517 CGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGGAATACCT 10458 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||||||||| || ||| ||| || || || |||| ||| || || | Sbjct 10457 TCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGACCTCAAGT 10398 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||| || || | |||||| | || | ||||| || Sbjct 10397 GTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354 >seq55403 Length=15030 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || || ||||| || || || ||||| || |||||||| Sbjct 3837 GAAGATTTGTCCATCAGTAATTGAAATGACATTGGTTGGAATGTAAGCTGATACATCACC 3896 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||||||||| | ||| |||||||| || | ||| ||||| || Sbjct 3897 AGCTTGTGTTTCAATAACTGGTAAGGCAGTCAATGAACCACCTCC 3941 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 ||||| ||||||||||| |||| |||| ||| ||||| | || | |||||||| || Sbjct 4163 CAATATCTTGCCCCATATTCAGGATGTGCTATGGGAGAGTTCTTCCGTGATAATGGAAAG 4104 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116 || |||||||||||||| ||||||||| ||||| Sbjct 4103 CACGCTTTAATCATCTATGATGATTTATCAAAACA 4069 >seq101420 Length=1006 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| ||||||||| |||||||||||||||| || || ||||| ||| | Sbjct 898 ATACTTCTGGATGCCCAAAAAATTAGAATAAATGTTGATATAGAATTGGATCTCCTTCTT 957 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | | | ||| |||||| | |||| ||||||| ||||||||||| Sbjct 958 CAGCTAGATTAAAAAATGAAATATTTAAATTTCGATCAGTTAAAA 1002 >seq77789 Length=2165 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| |||||||||||||||| ||||||||| || || |||| ||||| | Sbjct 1683 ATACTTCTGGATGTCCAAAAAATCAGAATAGATGTTGATATAGAATTAGATCTCCTCCTC 1742 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | | ||| |||||||| ||||| ||||| ||||||||||| Sbjct 1743 CAGCTGGGTCAAAAAATGAGGTATTTGCATTTCAATCAGTTAAAA 1787 >seq56497 Length=2171 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| ||||||||| |||||||||||||||| || || ||||| ||| | Sbjct 9 ATACTTCTGGATGCCCAAAAAATTAGAATAAATGTTGATATAGAATTGGATCTCCTTCTT 68 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | | | ||| |||||| | |||| ||||||| ||||||||||| Sbjct 69 CAGCTAGATTAAAAAATGAAATATTTAAATTTCGATCAGTTAAAA 113 >seq11085 Length=34595 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| |||| |||||||||||||||| |||||||| || || ||||| |||| | Sbjct 14764 ATACTTCTGGATTCTCAAAAAATCAGAATAATTGTTGATATAGAATTGGATCATCTCCTC 14823 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||| |||| ||||| | ||||| ||||||| ||||||||||| Sbjct 14824 CTGTCAGATCGAAAAATGTGGTATTTAAATTTCAATCAGTTAAAA 14868 >seq41759 Length=13259 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || ||||| |||||||||||||||| ||||||||| | ||||| || ||||| || || Sbjct 616 TCTGGATGTCCAAAAAATCAGAATAGATGTTGATATAAAATAGGGTCTCCTCCACCAGAA 675 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||||||| || || || ||||||| |||| || ||| Sbjct 676 GGATCAAAGAATGAGGTGTTTAAATTTCGATCAATTTAAA 715 >seq28165 Length=1504 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || ||||| |||||||||||||||| ||||||||| | ||||| || ||||| || || Sbjct 1276 TCTGGATGTCCAAAAAATCAGAATAGATGTTGATATAAAATAGGGTCTCCTCCACCAGAA 1217 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 |||||||| || || || ||||||| |||| || ||| Sbjct 1216 GGATCAAAGAATGAGGTGTTTAAATTTCGATCAATTTAAA 1177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1190494560186036