Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq50502 201 1e-46 >seq50502 Length=11567 Score = 201 bits (222), Expect = 1e-46 Identities = 206/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||||| ||||| |||| | ||| |||||||| ||||| | |||||| || ||| Sbjct 5113 TCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCA 5172 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || ||||| || ||||| || | ||||| || | ||| ||||| | || ||||| ||| Sbjct 5173 ATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCA 5232 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || | ||||| ||||| ||||| ||| |||||||||||| || |||||||| || ||| Sbjct 5233 ACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATA 5292 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACT 5051 || | |||| || | | ||||| |||||| | || |||||| | |||||||||| Sbjct 5293 AAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACT 5352 Query 5052 TCTTCAACAGTCCAAAACGACGCTTCCGC 5080 |||||||| |||||||| || ||||| || Sbjct 5353 TCTTCAACTGTCCAAAATGATGCTTCAGC 5381 Score = 123 bits (136), Expect = 2e-23 Identities = 180/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 |||| |||||| |||||||||||||| | ||||| || | ||| | ||| || ||| Sbjct 4767 AACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAA 4826 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || ||||| || ||||||| |||| ||||| | |||||||||||| ||||| ||| Sbjct 4827 AATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCA 4886 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC-GGGACCCGAACGAGCTGGC 4717 |||||| || ||||| || || ||||| || | | || ||| || ||| | Sbjct 4887 CTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAATTAGC-AGA 4945 Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777 ||| | ||||||| ||| ||||| | |||||||| ||||| ||||| | ||| | Sbjct 4946 TTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTC 5005 Query 4778 TATAGCGTTAAA 4789 ||||| || || Sbjct 5006 AATAGCATTGAA 5017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426355849116902