Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 201 1e-46
>seq50502
Length=11567
Score = 201 bits (222), Expect = 1e-46
Identities = 206/269 (77%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||||| ||||| |||| | ||| |||||||| ||||| | |||||| || |||
Sbjct 5113 TCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGCA 5172
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931
|| ||||| || ||||| || | ||||| || | ||| ||||| | || ||||| |||
Sbjct 5173 ATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTCA 5232
Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991
|| | ||||| ||||| ||||| ||| |||||||||||| || |||||||| || |||
Sbjct 5233 ACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAATA 5292
Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACT 5051
|| | |||| || | | ||||| |||||| | || |||||| | ||||||||||
Sbjct 5293 AAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAACT 5352
Query 5052 TCTTCAACAGTCCAAAACGACGCTTCCGC 5080
|||||||| |||||||| || ||||| ||
Sbjct 5353 TCTTCAACTGTCCAAAATGATGCTTCAGC 5381
Score = 123 bits (136), Expect = 2e-23
Identities = 180/252 (71%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598
|||| |||||| |||||||||||||| | ||||| || | ||| | ||| || |||
Sbjct 4767 AACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAA 4826
Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658
|| ||||| || ||||||| |||| ||||| | |||||||||||| ||||| |||
Sbjct 4827 AATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCA 4886
Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATC-GGGACCCGAACGAGCTGGC 4717
|||||| || ||||| || || ||||| || | | || ||| || ||| |
Sbjct 4887 CTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAATTAGC-AGA 4945
Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777
||| | ||||||| ||| ||||| | |||||||| ||||| ||||| | ||| |
Sbjct 4946 TTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTC 5005
Query 4778 TATAGCGTTAAA 4789
||||| || ||
Sbjct 5006 AATAGCATTGAA 5017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426355849116902
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |