Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq111833 113 5e-20 >seq111833 Length=3756 Score = 113 bits (124), Expect = 5e-20 Identities = 131/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 142552 CCCATATCGTCTTCACCTTTACGATTTGGGTTTTTTAACCATGCTTCATTCTCATTGGCA 142611 ||||| || |||||||||||||||| || ||||||| |||||||| || ||||| ||| Sbjct 1557 CCCATGTCATCTTCACCTTTACGATGGGGATTTTTTATCCATGCTTGGTTTTCATTCGCA 1616 Query 142612 TTAGCATTCCAAGTATTTGTACCAAGTGCCCGGAAATCTGCTGC-AGACGACAGACCACG 142670 || || ||||| ||||| ||||| | | || || | ||||| | | || ||||| Sbjct 1617 TTGGCGTTCCATGTATTGCAACCAATTTCACGAAACTGGGCTGCGTTATCATAG-CCACG 1675 Query 142671 AATATAACCCAGCAGTTCGGCAATGGATGCTTTATAAAAACTTTTACGAGTGGT 142724 || || || || || || ||||| | ||||| ||||| ||||||||||| || Sbjct 1676 AAGGTACCCAAGAAGCTCAGCAATTGCAGCTTTGTAAAAGCTTTTACGAGTCGT 1729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/255 (69%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 142019 ATCAAACACTGAATGGGTATTTAATTGGTTCGTGGTGTTGGTAGTTAACGATTTTAAAGT 142078 || |||| |||| |||||||| || | ||| ||| || || | | |||||| Sbjct 818 ATTAAACTGTGAAAGGGTATTTGATAGCTTCATGGCACTGATACCCTTCAAGGGTAAAGT 877 Query 142079 CATCTGTGGTAACCCATGTCTCAACATCTTCCAGAGACTTGATGTTAGGGTTAATAATTA 142138 ||||||| || ||||| || |||| ||||||||| ||||| || | ||| || |||| | Sbjct 878 CATCTGTCGTTACCCACGTTTCAAGATCTTCCAGTGACTTAATTTGAGGATTGATAACCA 937 Query 142139 GTTGAGGCTCGTCAAAGGGCTCACGGGAGATCTGTGTCGGCAC-CAT---AGGTAATTGG 142194 | |||| |||| ||||| || | ||| | | ||| ||| ||| ||||| Sbjct 938 ATGAAGGCGATGCAAAAGGCTCTCGTTTTAGCTG-GACATCACGCATTAAAGGCAATTGA 996 Query 142195 TCTTCATAGATATGTGCGTTCACAATCTTATAGAACATTTTACCTGGCTTGTTCCGGGTG 142254 | |||||| |||||||| |||||||| |||| | ||||||| || | || || Sbjct 997 TTTTCATAAATATGTGCATTCACAATTTTATGATAGGCCTTACCTGCTTTATGCCCCGTA 1056 Query 142255 ATTTGAGCCATCAGA 142269 ||| | ||||| ||| Sbjct 1057 ATTCGTGCCATTAGA 1071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521245264706640