Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_031020.1
Length=163201
Score E
Sequences producing significant alignments: (Bits) Value
seq111833 113 5e-20
>seq111833
Length=3756
Score = 113 bits (124), Expect = 5e-20
Identities = 131/174 (75%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 142552 CCCATATCGTCTTCACCTTTACGATTTGGGTTTTTTAACCATGCTTCATTCTCATTGGCA 142611
||||| || |||||||||||||||| || ||||||| |||||||| || ||||| |||
Sbjct 1557 CCCATGTCATCTTCACCTTTACGATGGGGATTTTTTATCCATGCTTGGTTTTCATTCGCA 1616
Query 142612 TTAGCATTCCAAGTATTTGTACCAAGTGCCCGGAAATCTGCTGC-AGACGACAGACCACG 142670
|| || ||||| ||||| ||||| | | || || | ||||| | | || |||||
Sbjct 1617 TTGGCGTTCCATGTATTGCAACCAATTTCACGAAACTGGGCTGCGTTATCATAG-CCACG 1675
Query 142671 AATATAACCCAGCAGTTCGGCAATGGATGCTTTATAAAAACTTTTACGAGTGGT 142724
|| || || || || || ||||| | ||||| ||||| ||||||||||| ||
Sbjct 1676 AAGGTACCCAAGAAGCTCAGCAATTGCAGCTTTGTAAAAGCTTTTACGAGTCGT 1729
Score = 95.1 bits (104), Expect = 1e-14
Identities = 176/255 (69%), Gaps = 5/255 (2%)
Strand=Plus/Plus
Query 142019 ATCAAACACTGAATGGGTATTTAATTGGTTCGTGGTGTTGGTAGTTAACGATTTTAAAGT 142078
|| |||| |||| |||||||| || | ||| ||| || || | | ||||||
Sbjct 818 ATTAAACTGTGAAAGGGTATTTGATAGCTTCATGGCACTGATACCCTTCAAGGGTAAAGT 877
Query 142079 CATCTGTGGTAACCCATGTCTCAACATCTTCCAGAGACTTGATGTTAGGGTTAATAATTA 142138
||||||| || ||||| || |||| ||||||||| ||||| || | ||| || |||| |
Sbjct 878 CATCTGTCGTTACCCACGTTTCAAGATCTTCCAGTGACTTAATTTGAGGATTGATAACCA 937
Query 142139 GTTGAGGCTCGTCAAAGGGCTCACGGGAGATCTGTGTCGGCAC-CAT---AGGTAATTGG 142194
| |||| |||| ||||| || | ||| | | ||| ||| ||| |||||
Sbjct 938 ATGAAGGCGATGCAAAAGGCTCTCGTTTTAGCTG-GACATCACGCATTAAAGGCAATTGA 996
Query 142195 TCTTCATAGATATGTGCGTTCACAATCTTATAGAACATTTTACCTGGCTTGTTCCGGGTG 142254
| |||||| |||||||| |||||||| |||| | ||||||| || | || ||
Sbjct 997 TTTTCATAAATATGTGCATTCACAATTTTATGATAGGCCTTACCTGCTTTATGCCCCGTA 1056
Query 142255 ATTTGAGCCATCAGA 142269
||| | ||||| |||
Sbjct 1057 ATTCGTGCCATTAGA 1071
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 521245264706640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |