Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq69808 830 0.0 seq50502 203 4e-47 >seq69808 Length=9325 Score = 830 bits (920), Expect = 0.0 Identities = 1312/1855 (71%), Gaps = 36/1855 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || |||||||| |||| ||| ||||| |||||||||| ||| | ||||||| || ||| Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 ||||| ||| ||| |||| | || || |||| ||||||||| | || ||||| Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA--GGAATTT 76980 ||||| ||||| || || | ||| || ||||||| || | || |||| | | ||||| Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072 Query 76981 CCCAAATAGTTTTG---AAAACTTGT-TTGATATCATCTGGAAGGTT-TGTATTT--TGA 77033 |||||| ||||| ||| || || ||||| | ||| | || | |||| || Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT----TGGTATATTATCAATTTCTTGT 8016 Query 77034 ATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCT 77093 || ||||||| || || || |||||||| || |||||||||| ||| || | ||| Sbjct 8015 ATAGAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCT 7956 Query 77094 GTTAAAACTCT-AAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACG 77152 |||||| || | || ||| | ||||||||| |||||| ||||| ||||| | ||| Sbjct 7955 GTTAAATCTTTTAATAAGAA-ATGATTAACTACAACAAATTCACCAGATAATACACGACG 7897 Query 77153 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGT 77212 | || ||||| ||||| || || | ||||| || || || |||||||| || || Sbjct 7896 ATGATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGT 7837 Query 77213 AGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT 77272 || || |||||||| ||||| | || ||| ||||| || ||||||| | | ||||| Sbjct 7836 TGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTT 7777 Query 77273 ATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTG 77332 ||||| || | ||||||| ||| ||||| | ||| || ||| | ||| ||||| Sbjct 7776 TTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTG 7717 Query 77333 TAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGC 77392 || || || | ||| | |||||||| |||||||||||| | || | | |||||| Sbjct 7716 AAGTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGC 7657 Query 77393 TAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 77452 || ||| ||||| || || ||||| || |||||||||||||| || || | | ||| | Sbjct 7656 TAATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAA 7597 Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512 | |||||||| ||| ||| | || ||| | | | |||||| ||||| ||||| || Sbjct 7596 TTTCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCC 7537 Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572 || || ||||||||||| |||| ||| | ||| || |||| |||||||| | ||| Sbjct 7536 TTGTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGG 7477 Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632 |||||||||||| || ||||||||||| | |||||| ||| | ||| || || || Sbjct 7476 ATAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTT 7417 Query 77633 TAGTTTAAGAAAATCAAATCTTCCAT---CTATAACAAACATGTTCAAAGCTATAGATGC 77689 ||||| ||||||| || || || || |||||||||| || ||||| || || || Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357 Query 77690 TAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGAT 77748 || ||||||||| |||| |||| | | | | | ||||| | || || ||||| |||| Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCT-GAATATTCAACAATTTCTGTACACAGAT 7298 Query 77749 TACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTAT 77808 |||||||||| || ||||| | |||||||| || || ||| ||| || | || |||| Sbjct 7297 TACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTAT 7238 Query 77809 AAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 77868 | | ||| | ||||| || ||||||| || ||||| || |||| ||| | | Sbjct 7237 ATAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAAC 7178 Query 77869 TAGCTTTTA-TCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCA 77927 ||||| | | | ||| | | || | || ||||||||| | |||| || | ||| Sbjct 7177 GTGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCA 7119 Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987 |||| || ||||| |||| | || ||||| |||| || ||| ||||| |||||||| Sbjct 7118 AATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAA 7059 Query 77988 TCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 78047 | | |||| | | ||| ||||||||||| | ||| || ||||| | ||| ||||| | Sbjct 7058 TTATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAA 6999 Query 78048 TCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATA 78107 || | | | ||||||||| |||| ||||| ||||| | || | ||| || | |||| Sbjct 6998 TCCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATA 6939 Query 78108 TCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGA 78167 || | |||||||||||||| ||| || || | | || |||||||||||||| || ||| Sbjct 6938 TCTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGA 6879 Query 78168 TCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTT 78227 || | |||||| || |||||| | || | |||||||| | | ||| || ||| | Sbjct 6878 TCAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATA 6819 Query 78228 CCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT---AT-TACTAATGGATATCCC 78283 |||||||| |||| ||| | | || ||| || || || ||| || ||| || Sbjct 6818 CCATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--AT--TTATTCC 6763 Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343 || || || || | || ||||| | ||||| ||| | || | | ||||| || Sbjct 6762 AATACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTC 6703 Query 78344 TATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 78402 || ||||| | || |||||| || |||||| || | |||| || || ||| Sbjct 6702 AATTGAATCATCAACCATTGTTAATAA-AAAACATGATGATAATTGAGGACGACGTGTTG 6644 Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462 ||||| ||||||||| || |||||||| ||||| | ||| || | ||||| || | Sbjct 6643 CTGCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAG 6584 Query 78463 TTTCAATAGCTGATTCTAT-GTCCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521 |||||||| | | || || | || | || || || || || |||||||| |||||| Sbjct 6583 TTTCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATA 6525 Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581 || || ||||||||| | | ||| ||| ||||| ||||| |||||| |||| || ||| Sbjct 6524 TGTTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTT 6465 Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636 |||||||||||||| || || ||| || | || |||||||| | ||||||| Sbjct 6464 TTAAAACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATTTA 6410 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805 ||||| ||||||||||||||| || | ||| || || || |||||||| |||| ||| || Sbjct 4927 AAATACTTTTTTTGTTTCCTTATGCAAATTTGAGACTGCAATTCTTGCTGCTAAAATTGC 4868 Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865 |||||| | ||| || || || || || ||| |||||||||||||| |||| | || Sbjct 4867 ATAATCGGCATGATGAGTCGTCATTGTTGCGGCTGTTTCTGCCGCTAAATTATCAAGTTC 4808 Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 | |||||| || ||| | || || || | || ||||| Sbjct 4807 TTGAGTTGTAACACCAGTGTAAAGGCCGTTTATTACTTT 4769 >seq50502 Length=11567 Score = 203 bits (224), Expect = 4e-47 Identities = 207/270 (77%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | || || || ||||||| || |||||||| || |||| |||||||||||| Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 || ||||| || |||||||| | ||||| || || ||||| || || ||||||||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 | | | ||| |||||||| || |||||| || |||||||||||||| |||||| ||| Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 48640 ||||| ||| ||| | ||| | ||||| | ||||||||||||| ||| || Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 48641 TTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||||||| |||||||||||||||| || || Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGC 5381 Score = 185 bits (204), Expect = 1e-41 Identities = 202/267 (76%), Gaps = 5/267 (2%) Strand=Plus/Plus Query 48123 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAAT 48182 ||||| || ||||||||||||||||||||||||||||| |||||||| | ||||||| Sbjct 4758 AAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAAT 4817 Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 || || |||||||| | ||| ||||||| ||| |||||||| | ||||||||| || || Sbjct 4818 TCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCA 4877 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||| |||| |||||| || ||||| || || ||||| || ||| ||| || ||| || Sbjct 4878 AAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAA 4937 Query 48303 CTGGC----TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 | || || ||| ||||| | |||||||| || || || || ||||| || Sbjct 4938 TTAGCAGATTTACTTG-CAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 48359 CATTGTTTCTATAGCATTAAAGAGAAA 48385 | |||||| |||||||| || || || Sbjct 4997 TAATGTTTCAATAGCATTGAAAAGGAA 5023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693511360212160