Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 830 0.0
seq50502 203 4e-47
>seq69808
Length=9325
Score = 830 bits (920), Expect = 0.0
Identities = 1312/1855 (71%), Gaps = 36/1855 (2%)
Strand=Plus/Minus
Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862
|| |||||||| |||| ||| ||||| |||||||||| ||| | ||||||| || |||
Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190
Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922
||||| ||| ||| |||| | || || |||| ||||||||| | || |||||
Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130
Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA--GGAATTT 76980
||||| ||||| || || | ||| || ||||||| || | || |||| | | |||||
Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072
Query 76981 CCCAAATAGTTTTG---AAAACTTGT-TTGATATCATCTGGAAGGTT-TGTATTT--TGA 77033
|||||| ||||| ||| || || ||||| | ||| | || | |||| ||
Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT----TGGTATATTATCAATTTCTTGT 8016
Query 77034 ATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCT 77093
|| ||||||| || || || |||||||| || |||||||||| ||| || | |||
Sbjct 8015 ATAGAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCT 7956
Query 77094 GTTAAAACTCT-AAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACG 77152
|||||| || | || ||| | ||||||||| |||||| ||||| ||||| | |||
Sbjct 7955 GTTAAATCTTTTAATAAGAA-ATGATTAACTACAACAAATTCACCAGATAATACACGACG 7897
Query 77153 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGT 77212
| || ||||| ||||| || || | ||||| || || || |||||||| || ||
Sbjct 7896 ATGATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGT 7837
Query 77213 AGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT 77272
|| || |||||||| ||||| | || ||| ||||| || ||||||| | | |||||
Sbjct 7836 TGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTT 7777
Query 77273 ATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTG 77332
||||| || | ||||||| ||| ||||| | ||| || ||| | ||| |||||
Sbjct 7776 TTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTG 7717
Query 77333 TAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGC 77392
|| || || | ||| | |||||||| |||||||||||| | || | | ||||||
Sbjct 7716 AAGTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGC 7657
Query 77393 TAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 77452
|| ||| ||||| || || ||||| || |||||||||||||| || || | | ||| |
Sbjct 7656 TAATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAA 7597
Query 77453 ATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCC 77512
| |||||||| ||| ||| | || ||| | | | |||||| ||||| ||||| ||
Sbjct 7596 TTTCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCC 7537
Query 77513 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGG 77572
|| || ||||||||||| |||| ||| | ||| || |||| |||||||| | |||
Sbjct 7536 TTGTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGG 7477
Query 77573 ATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTT 77632
|||||||||||| || ||||||||||| | |||||| ||| | ||| || || ||
Sbjct 7476 ATAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTT 7417
Query 77633 TAGTTTAAGAAAATCAAATCTTCCAT---CTATAACAAACATGTTCAAAGCTATAGATGC 77689
||||| ||||||| || || || || |||||||||| || ||||| || || ||
Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357
Query 77690 TAGATTACAAACTGCTACCTCAT-TAGCGTTGGCATATTGTATTATCTCGGTACATAGAT 77748
|| ||||||||| |||| |||| | | | | | ||||| | || || ||||| ||||
Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCT-GAATATTCAACAATTTCTGTACACAGAT 7298
Query 77749 TACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTAT 77808
|||||||||| || ||||| | |||||||| || || ||| ||| || | || ||||
Sbjct 7297 TACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTAT 7238
Query 77809 AAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 77868
| | ||| | ||||| || ||||||| || ||||| || |||| ||| | |
Sbjct 7237 ATAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAAC 7178
Query 77869 TAGCTTTTA-TCATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCA 77927
||||| | | | ||| | | || | || ||||||||| | |||| || | |||
Sbjct 7177 GTGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCA 7119
Query 77928 AATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAG 77987
|||| || ||||| |||| | || ||||| |||| || ||| ||||| ||||||||
Sbjct 7118 AATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAA 7059
Query 77988 TCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGA 78047
| | |||| | | ||| ||||||||||| | ||| || ||||| | ||| ||||| |
Sbjct 7058 TTATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAA 6999
Query 78048 TCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATA 78107
|| | | | ||||||||| |||| ||||| ||||| | || | ||| || | ||||
Sbjct 6998 TCCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATA 6939
Query 78108 TCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGA 78167
|| | |||||||||||||| ||| || || | | || |||||||||||||| || |||
Sbjct 6938 TCTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGA 6879
Query 78168 TCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTT 78227
|| | |||||| || |||||| | || | |||||||| | | ||| || ||| |
Sbjct 6878 TCAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATA 6819
Query 78228 CCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAAT---AT-TACTAATGGATATCCC 78283
|||||||| |||| ||| | | || ||| || || || ||| || ||| ||
Sbjct 6818 CCATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTAC--AT--TTATTCC 6763
Query 78284 TATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTC 78343
|| || || || | || ||||| | ||||| ||| | || | | ||||| ||
Sbjct 6762 AATACCACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTC 6703
Query 78344 TATACTGTCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTC 78402
|| ||||| | || |||||| || |||||| || | |||| || || |||
Sbjct 6702 AATTGAATCATCAACCATTGTTAATAA-AAAACATGATGATAATTGAGGACGACGTGTTG 6644
Query 78403 CTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATG 78462
||||| ||||||||| || |||||||| ||||| | ||| || | ||||| || |
Sbjct 6643 CTGCAGCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAG 6584
Query 78463 TTTCAATAGCTGATTCTAT-GTCCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521
|||||||| | | || || | || | || || || || || |||||||| ||||||
Sbjct 6583 TTTCAATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATA 6525
Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581
|| || ||||||||| | | ||| ||| ||||| ||||| |||||| |||| || |||
Sbjct 6524 TGTTGTGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTT 6465
Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTA 78636
|||||||||||||| || || ||| || | || |||||||| | |||||||
Sbjct 6464 TTAAAACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATTTA 6410
Score = 111 bits (122), Expect = 2e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 78746 AAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGC 78805
||||| ||||||||||||||| || | ||| || || || |||||||| |||| ||| ||
Sbjct 4927 AAATACTTTTTTTGTTTCCTTATGCAAATTTGAGACTGCAATTCTTGCTGCTAAAATTGC 4868
Query 78806 ATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTC 78865
|||||| | ||| || || || || || ||| |||||||||||||| |||| | ||
Sbjct 4867 ATAATCGGCATGATGAGTCGTCATTGTTGCGGCTGTTTCTGCCGCTAAATTATCAAGTTC 4808
Query 78866 TATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904
| |||||| || ||| | || || || | || |||||
Sbjct 4807 TTGAGTTGTAACACCAGTGTAAAGGCCGTTTATTACTTT 4769
>seq50502
Length=11567
Score = 203 bits (224), Expect = 4e-47
Identities = 207/270 (77%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
|||||| | || || || ||||||| || |||||||| || |||| ||||||||||||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520
|| ||||| || |||||||| | ||||| || || ||||| || || |||||||||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580
| | | ||| |||||||| || |||||| || |||||||||||||| |||||| |||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 48581 AAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 48640
||||| ||| ||| | ||| | ||||| | ||||||||||||| ||| ||
Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351
Query 48641 TTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670
||||||| |||||||||||||||| || ||
Sbjct 5352 TTCTTCAACTGTCCAAAATGATGCTTCAGC 5381
Score = 185 bits (204), Expect = 1e-41
Identities = 202/267 (76%), Gaps = 5/267 (2%)
Strand=Plus/Plus
Query 48123 AAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAAT 48182
||||| || ||||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 4758 AAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAAT 4817
Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242
|| || |||||||| | ||| ||||||| ||| |||||||| | ||||||||| || ||
Sbjct 4818 TCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCA 4877
Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302
||| |||| |||||| || ||||| || || ||||| || ||| ||| || ||| ||
Sbjct 4878 AAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAA 4937
Query 48303 CTGGC----TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358
| || || ||| ||||| | |||||||| || || || || ||||| ||
Sbjct 4938 TTAGCAGATTTACTTG-CAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 48359 CATTGTTTCTATAGCATTAAAGAGAAA 48385
| |||||| |||||||| || || ||
Sbjct 4997 TAATGTTTCAATAGCATTGAAAAGGAA 5023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693511360212160
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