Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq69808 818 0.0 seq50502 215 7e-51 >seq69808 Length=9325 Score = 818 bits (906), Expect = 0.0 Identities = 1302/1850 (70%), Gaps = 26/1850 (1%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||||||||| |||| ||| ||||| |||||||||| ||| | ||||||| || ||| Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 ||||| ||||||| |||| | || || |||| ||||||||| | || ||||| Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA--GGAATTT 75575 ||||| ||||| || || | ||| || ||||||| || | || |||| | | ||||| Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072 Query 75576 CCCAAATAGTTTTG---AAAACTTGT-TTGATATCATCTGGAAGATT-TGTATTT--TGA 75628 |||||| ||||| ||| || || ||||| | ||| | ||| | |||| || Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT----TGGTATATTATCAATTTCTTGT 8016 Query 75629 ATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCG 75688 || || || | || | || |||||||| || || ||||||| ||| || | || Sbjct 8015 ATAGAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCT 7956 Query 75689 GTTAAAACTCT-AAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCG 75747 |||||| || | || ||| | ||||||| | |||||| ||||| ||||| | || Sbjct 7955 GTTAAATCTTTTAATAAGAA-ATGATTAACTACAACAAATTCACCAGATAATACACGACG 7897 Query 75748 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGT 75807 | || ||||| ||||| || || | ||||| || || || |||||||| || || Sbjct 7896 ATGATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGT 7837 Query 75808 TGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT 75867 ||| || || ||||| ||||| | || ||| ||||| || ||||||| | | ||||| Sbjct 7836 TGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTT 7777 Query 75868 ATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTG 75927 ||||| || | ||||||| ||| ||||| | |||| || ||| | ||| ||||| Sbjct 7776 TTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTG 7717 Query 75928 TAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGC 75987 || || || | |||| | |||||||| ||||||||| || | || | |||||| Sbjct 7716 AAGTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGC 7657 Query 75988 TAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG 76047 || ||||||||| |||||||| ||||| |||||||||||||| || || | | ||| | Sbjct 7656 TAATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAA 7597 Query 76048 ATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCC 76107 | || ||||| ||| ||| | || ||| | | | |||||||||||| |||| || Sbjct 7596 TTTCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCC 7537 Query 76108 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGG 76167 || || ||||||||||| |||| ||| | ||| || ||| |||||||| | ||| Sbjct 7536 TTGTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGG 7477 Query 76168 GTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTT 76227 |||||||||||||| ||||||||||| | |||||| ||| | ||| || || || Sbjct 7476 ATAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTT 7417 Query 76228 TAGTTTGAGAAAATCAAATTTTCCAT---CTATCACAAACATATTAAGAGCTATAGATGC 76284 ||||| ||||||| ||||| || || | ||||||||||| | ||| || || || Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357 Query 76285 TAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATT 76344 || ||||||||| |||| |||| | | ||||| | || || || || ||||| Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297 Query 76345 ACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATA 76404 |||||| || || || |||| |||||||| || || ||| ||||| | || ||||| Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237 Query 76405 AAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT 76464 | | | | ||||| |||||||||| || ||||| || |||| ||| | | Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177 Query 76465 AGCTTTTATT-ATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAA 76523 ||||| ||| | ||| | | || || ||||||||| |||| | | |||| Sbjct 7176 TGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118 Query 76524 ATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACT 76583 ||| || ||||| |||| | ||||||||||||| || |||||||| |||||||| | Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058 Query 76584 CACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 76643 | |||| | | ||| ||||||||||| | ||| || ||||| | ||| ||||| || Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998 Query 76644 CTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATAT 76703 | | | | | ||||||| |||| ||||| ||||| | || || || || | ||||| Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938 Query 76704 CAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGAT 76763 | | |||||||||||||| ||| || || | |||| |||||||||||||| || |||| Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878 Query 76764 CTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTAC 76823 | | |||||| ||| |||||| | || | |||||||| | | || || ||| ||| Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818 Query 76824 CATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTC 76883 ||||||| |||| ||| | | || || ||| || | | | || || || | Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATAC 6758 Query 76884 CTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATAC 76943 | || || |||| || || | || || ||| | || | | | || || || || Sbjct 6757 CACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAATTG 6698 Query 76944 TATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 |||||| | || |||||| || |||||| || | |||| || || ||| ||||| Sbjct 6697 AATCATCAACCATTGTTAATAA-AAAACATGATGATAATTGAGGACGACGTGTTGCTGCA 6639 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062 ||| ||||| || ||||||||||| || | ||| || | ||||| || |||||| Sbjct 6638 GCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCA 6579 Query 77063 ATAACTGCTTCTATA-TCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTG 77121 ||||| || || ||| | || | || || || || || |||||||| |||||||| || Sbjct 6578 ATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATATGTTG 6520 Query 77122 AGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAA 77181 |||| ||| || | ||| ||| ||||| ||||| |||||| |||| || |||||||| Sbjct 6519 TGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAA 6460 Query 77182 ACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 ||||||||| || || ||| || | || |||||||| ||||||||| Sbjct 6459 ACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATTTA 6410 Score = 107 bits (118), Expect = 3e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400 ||||| ||||||||||||||| || | ||| || || || ||||| || |||| |||||| Sbjct 4927 AAATACTTTTTTTGTTTCCTTATGCAAATTTGAGACTGCAATTCTTGCTGCTAAAATTGC 4868 Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTC 77460 ||| || | ||| || || || || || ||| |||||||||||||| |||| | ||| Sbjct 4867 ATAATCGGCATGATGAGTCGTCATTGTTGCGGCTGTTTCTGCCGCTAAATTATCAAGTTC 4808 Query 77461 TATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTT 77499 | ||| ||||| || | || || || | || ||||| Sbjct 4807 TTGAGTTGTAACACCAGTGTAAAGGCCGTTTATTACTTT 4769 >seq50502 Length=11567 Score = 215 bits (238), Expect = 7e-51 Identities = 212/271 (78%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | ||| || || ||||||| || |||||||||||||||| |||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || ||||| || |||||||| | |||||||||||| ||||| ||| || ||||||||| Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 47010 AGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 | |||| ||| ||||| || || |||||| || ||||||||||| || |||||| || Sbjct 5232 A-ACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAA 5290 Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTA 47128 |||||| ||| | |||| | ||| | ||||| | ||||||||||||| ||| | Sbjct 5291 TAAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAA 5350 Query 47129 CTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 |||||||| ||||||| ||||| || || || Sbjct 5351 CTTCTTCAACTGTCCAAAATGATGCTTCAGC 5381 Score = 205 bits (226), Expect = 1e-47 Identities = 232/308 (75%), Gaps = 5/308 (2%) Strand=Plus/Plus Query 46570 GATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAA 46629 |||| | || ||| ||| |||| | ||||| || | ||||| || ||||||||| Sbjct 4718 GATAATTTCAATG--ACTCTTTCATTGCTTGGCTTTTGTACTAAATGCTTGAACATTAAA 4775 Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 |||||||||||||||||||| |||||||| | ||||||||| || |||||||| | Sbjct 4776 CATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAAAATGTTAAA 4835 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||||| ||| || ||||| | |||||||||||| || ||| |||| |||||| Sbjct 4836 CCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCACTAAAGAAA 4895 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA--TG-A 46806 || ||||| ||||| || || || | || ||| || ||| || | ||| ||| || | Sbjct 4896 ATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAATTAGCAGATTTACTTGCA 4955 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | ||||||||| || ||||| || ||||| || | |||||| |||||||| Sbjct 4956 ATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTCAATAGCATTG 5015 Query 46867 AAGAGAAA 46874 || || || Sbjct 5016 AAAAGGAA 5023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711746526526080