Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq69808 818 0.0
seq50502 215 7e-51
>seq69808
Length=9325
Score = 818 bits (906), Expect = 0.0
Identities = 1302/1850 (70%), Gaps = 26/1850 (1%)
Strand=Plus/Minus
Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457
||||||||||| |||| ||| ||||| |||||||||| ||| | ||||||| || |||
Sbjct 8249 GCTGGTTTTGTTCGTAAATAATACATTCCAGTTTTTAAACCTAACTTCCATCCATAAAAA 8190
Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517
||||| ||||||| |||| | || || |||| ||||||||| | || |||||
Sbjct 8189 TGCATTGATGTTAGTAAACCATAATTTGGTTCAGCTACATGAATATTAAATGATTGACTC 8130
Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA--GGAATTT 75575
||||| ||||| || || | ||| || ||||||| || | || |||| | | |||||
Sbjct 8129 TGATCAATGAATGCCCCACGATCTGCAGCCATTTGCAT--TTGTGTTTTAACTGAAATTT 8072
Query 75576 CCCAAATAGTTTTG---AAAACTTGT-TTGATATCATCTGGAAGATT-TGTATTT--TGA 75628
|||||| ||||| ||| || || ||||| | ||| | ||| | |||| ||
Sbjct 8071 CCCAAACTGTTTTATATAAATCTCGTATTGATTT----TGGTATATTATCAATTTCTTGT 8016
Query 75629 ATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCG 75688
|| || || | || | || |||||||| || || ||||||| ||| || | ||
Sbjct 8015 ATAGAACCACGATTTGCAATTATTGTATTTTTCATATCATCATCCCATAAATCAAGTTCT 7956
Query 75689 GTTAAAACTCT-AAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCG 75747
|||||| || | || ||| | ||||||| | |||||| ||||| ||||| | ||
Sbjct 7955 GTTAAATCTTTTAATAAGAA-ATGATTAACTACAACAAATTCACCAGATAATACACGACG 7897
Query 75748 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGT 75807
| || ||||| ||||| || || | ||||| || || || |||||||| || ||
Sbjct 7896 ATGATAGATATTTGATGTATAAGGCTCAAATGATTCGTTATTACCTAAAATTTGTGCTGT 7837
Query 75808 TGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT 75867
||| || || ||||| ||||| | || ||| ||||| || ||||||| | | |||||
Sbjct 7836 TGATGCTGTTGGCATTGGTGCAATTAACAAAGAATTTCGGATACCATGTTGTTTAATTTT 7777
Query 75868 ATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTG 75927
||||| || | ||||||| ||| ||||| | |||| || ||| | ||| |||||
Sbjct 7776 TTCTTTAAGTTCATTCCAATTCCATAGATCAGTTGGTGTTTTATTCCACATATCATATTG 7717
Query 75928 TAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGC 75987
|| || || | |||| | |||||||| ||||||||| || | || | ||||||
Sbjct 7716 AAGTATACCTTGGCTAACTGGTGATCCATCATATGTTTCATATGAACCATATAATTCAGC 7657
Query 75988 TAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG 76047
|| ||||||||| |||||||| ||||| |||||||||||||| || || | | ||| |
Sbjct 7656 TAATTCGCAACTAGCCTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTTAA 7597
Query 76048 ATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCC 76107
| || ||||| ||| ||| | || ||| | | | |||||||||||| |||| ||
Sbjct 7596 TTTCTGTGCTTCTTCACTTTCATATGGGTAACGCATTAAAATAAATGCATCAGCTAAGCC 7537
Query 76108 CTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGG 76167
|| || ||||||||||| |||| ||| | ||| || ||| |||||||| | |||
Sbjct 7536 TTGTACGCCAATACCAATTGGTCGATGACGAAAATTTGATTTTTTTGCTTCTGGTAAAGG 7477
Query 76168 GTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTT 76227
|||||||||||||| ||||||||||| | |||||| ||| | ||| || || ||
Sbjct 7476 ATAATAATTAATATCAATAATTTTATTCAAATTTCTTGTAACAATTTTTGTAACTTCTTT 7417
Query 76228 TAGTTTGAGAAAATCAAATTTTCCAT---CTATCACAAACATATTAAGAGCTATAGATGC 76284
||||| ||||||| ||||| || || | ||||||||||| | ||| || || ||
Sbjct 7416 AAGTTTTTTAAAATCATATTTTTTATCTGCTGTAACAAACATATTTAAAGCAATTGAAGC 7357
Query 76285 TAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATT 76344
|| ||||||||| |||| |||| | | ||||| | || || || || |||||
Sbjct 7356 TAAATTACAAACAGCTATTTCATCTGGTGCTGAATATTCAACAATTTCTGTACACAGATT 7297
Query 76345 ACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATA 76404
|||||| || || || |||| |||||||| || || ||| ||||| | || |||||
Sbjct 7296 ACTACATTTAATGGTGCCAATGTTTTGTTGATTACTTTTTCGATTACACGCATCTTTATA 7237
Query 76405 AAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT 76464
| | | | ||||| |||||||||| || ||||| || |||| ||| | |
Sbjct 7236 TAACATATATGGAGTACCAGTTTCAACTTGAGATTCAATTATAGCAAACCATAATGAACG 7177
Query 76465 AGCTTTTATT-ATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAA 76523
||||| ||| | ||| | | || || ||||||||| |||| | | ||||
Sbjct 7176 TGCTTTAATTGTTTTATTAGCA-CGACCTTCATTTTCATATTTAATATAAAGTTGATCAA 7118
Query 76524 ATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACT 76583
||| || ||||| |||| | ||||||||||||| || |||||||| |||||||| |
Sbjct 7117 ATTTTTCACCCCATACATTAAATAAACCAGGACATTTATGTGGACACATTAATGACCAAT 7058
Query 76584 CACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 76643
| |||| | | ||| ||||||||||| | ||| || ||||| | ||| ||||| ||
Sbjct 7057 TATCATCAGCTTCAACACGTTTCATAAATAAATCTGGAATCCACATTGCATAAAATAAAT 6998
Query 76644 CTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATAT 76703
| | | | | ||||||| |||| ||||| ||||| | || || || || | |||||
Sbjct 6997 CCCTAGCACGATGTTCTTCTGTTCCAGTATTTTTTTTTAAATTTAAAAATTCAAAAATAT 6938
Query 76704 CAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGAT 76763
| | |||||||||||||| ||| || || | |||| |||||||||||||| || ||||
Sbjct 6937 CTGCATGCCATGGTTCTAAATAAATAGCAAATGCACCTGGTCGTTTATTACCACCTTGAT 6878
Query 76764 CTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTAC 76823
| | |||||| ||| |||||| | || | |||||||| | | || || ||| |||
Sbjct 6877 CAACATATCTAGCAACATTATTAAAGACACGTAACATTGGTACTAAACCATTTGATATAC 6818
Query 76824 CATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTC 76883
||||||| |||| ||| | | || || ||| || | | | || || || |
Sbjct 6817 CATTTGTGCCAGCAATTGATGTACCTTTTGAACGTATGCAATGTACATTTATTCCAATAC 6758
Query 76884 CTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATAC 76943
| || || |||| || || | || || ||| | || | | | || || || ||
Sbjct 6757 CACCAGCATTTTTTGATATCATTGCGCATTGTTCAATTGATTTAAATATACCTTCAATTG 6698
Query 76944 TATCATCCATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002
|||||| | || |||||| || |||||| || | |||| || || ||| |||||
Sbjct 6697 AATCATCAACCATTGTTAATAA-AAAACATGATGATAATTGAGGACGACGTGTTGCTGCA 6639
Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062
||| ||||| || ||||||||||| || | ||| || | ||||| || ||||||
Sbjct 6638 GCAAATAATGTTGGTGATGCATGAGTAAAATAACGTTCTGATAAAAGATTATAAGTTTCA 6579
Query 77063 ATAACTGCTTCTATA-TCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTG 77121
||||| || || ||| | || | || || || || || |||||||| |||||||| ||
Sbjct 6578 ATAACAGCATCAATATTATCACCG-TGTATACCAACTGCAACACGCATTAACATATGTTG 6520
Query 77122 AGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAA 77181
|||| ||| || | ||| ||| ||||| ||||| |||||| |||| || ||||||||
Sbjct 6519 TGGTCTTTCAGCAATTTTACCATTAATTTTTAACAAATATGATCTTTCTAATGTTTTAAA 6460
Query 77182 ACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231
||||||||| || || ||| || | || |||||||| |||||||||
Sbjct 6459 ACCAAAATAATTATACCCAAAATCACGATCATAAATAATTGCCGAATTTA 6410
Score = 107 bits (118), Expect = 3e-18
Identities = 119/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400
||||| ||||||||||||||| || | ||| || || || ||||| || |||| ||||||
Sbjct 4927 AAATACTTTTTTTGTTTCCTTATGCAAATTTGAGACTGCAATTCTTGCTGCTAAAATTGC 4868
Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTC 77460
||| || | ||| || || || || || ||| |||||||||||||| |||| | |||
Sbjct 4867 ATAATCGGCATGATGAGTCGTCATTGTTGCGGCTGTTTCTGCCGCTAAATTATCAAGTTC 4808
Query 77461 TATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTT 77499
| ||| ||||| || | || || || | || |||||
Sbjct 4807 TTGAGTTGTAACACCAGTGTAAAGGCCGTTTATTACTTT 4769
>seq50502
Length=11567
Score = 215 bits (238), Expect = 7e-51
Identities = 212/271 (78%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||| | ||| || || ||||||| || |||||||||||||||| |||||||| ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
|| ||||| || |||||||| | |||||||||||| ||||| ||| || |||||||||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 47010 AGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068
| |||| ||| ||||| || || |||||| || ||||||||||| || |||||| ||
Sbjct 5232 A-ACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAA 5290
Query 47069 TAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTA 47128
|||||| ||| | |||| | ||| | ||||| | ||||||||||||| ||| |
Sbjct 5291 TAAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAA 5350
Query 47129 CTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159
|||||||| ||||||| ||||| || || ||
Sbjct 5351 CTTCTTCAACTGTCCAAAATGATGCTTCAGC 5381
Score = 205 bits (226), Expect = 1e-47
Identities = 232/308 (75%), Gaps = 5/308 (2%)
Strand=Plus/Plus
Query 46570 GATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAA 46629
|||| | || ||| ||| |||| | ||||| || | ||||| || |||||||||
Sbjct 4718 GATAATTTCAATG--ACTCTTTCATTGCTTGGCTTTTGTACTAAATGCTTGAACATTAAA 4775
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|||||||||||||||||||| |||||||| | ||||||||| || |||||||| |
Sbjct 4776 CATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAATTCATTTGAAAATGTTAAA 4835
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749
|||||||||| ||| || ||||| | |||||||||||| || ||| |||| ||||||
Sbjct 4836 CCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGCAAAACTTCCACTAAAGAAA 4895
Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA--TG-A 46806
|| ||||| ||||| || || || | || ||| || ||| || | ||| ||| || |
Sbjct 4896 ATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAAATTAGCAGATTTACTTGCA 4955
Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866
||||| | ||||||||| || ||||| || ||||| || | |||||| ||||||||
Sbjct 4956 ATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGGTAATGTTTCAATAGCATTG 5015
Query 46867 AAGAGAAA 46874
|| || ||
Sbjct 5016 AAAAGGAA 5023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 711746526526080
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