Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq30817 125 5e-24 >seq30817 Length=4284 Score = 125 bits (138), Expect = 5e-24 Identities = 241/353 (68%), Gaps = 2/353 (1%) Strand=Plus/Minus Query 44702 GCGAGCGCCGATCATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACG 44761 |||| | || | ||||||||| | |||||| | || | | ||| || || || || Sbjct 377 GCGACCACCTAACATTTGCATTGAGCCGCCAATATTCACAACCACTTCTGTTGTATAGCG 318 Query 44762 TTCTACACCGGCGTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTG 44821 ||| |||| | || ||| ||||| |||| | |||||||| ||||| || Sbjct 317 ATCTTGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCTTCGATATAGACTTG 258 Query 44822 AGAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTT 44881 || |||||| | || || | |||| |||||| | ||| ||||| | ||| || Sbjct 257 TGAGCCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCCGAAAATAACCACACG 198 Query 44882 ATGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGT 44941 |||||||| |||| || | | || ||||||||||| ||||| |||| || Sbjct 197 GTGCCATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACGCCAACTTTCAGAAGT 138 Query 44942 TGCGATGCTGAGTCTTCCGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTG 45001 ||| | | || || | ||||||||||| || || ||||| | ||| || || ||||| Sbjct 137 TGCCAGAGTCAGGTTTGCCACCGCTCCGCCGTTAGGCATATAACGGATTTCAGGATCTTG 78 Query 45002 CCCCAGGGTACCAATCAGGATGACTTTGTTTACACCGC-GTTGTGCCATTTAT 45053 ||| ||| |||| || || || ||||| ||||| || | | || ||||||||| Sbjct 77 CCCTAGGTTACCGATAAGAATTACTTTATTTACGCCTCTGCTG-GCCATTTAT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330361647424804