Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq116239 84.2 5e-11 >seq116239 Length=11340 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || || || ||||| ||||||||||| | || || || ||||| Sbjct 4567 AGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGACAATGTCCTACCATCC 4626 Query 151953 TCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || || || || | | || || || | | || |||||||| | Sbjct 4627 TCCAATTGCTTT--CCAGCAAAAATCAAACGTTGTTGATCTGGTGGAATGCCTTCCTTGT 4684 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| ||| ||| ||| | || | |||| || ||| || || | ||||| | Sbjct 4685 CTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACCTCCAATGTAATTG 4744 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||| || || | ||| || || || | ||||||||| Sbjct 4745 TTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151850270944274