Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq30817 89.7 2e-13 >seq30817 Length=4284 Score = 89.7 bits (98), Expect = 2e-13 Identities = 188/278 (68%), Gaps = 13/278 (5%) Strand=Plus/Minus Query 36521 CCATTTACGAGTACGAAGCTGGCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTC 36580 ||||||||| || | | | |||||||| || || || || |||||| |||||||| Sbjct 296 CCATTTACGTGTTTGTAACGAACCTTCGATATAGACTTGTGAGCCTTTTTTCAGGTATTC 237 Query 36581 TCCTGCAACTTCCGCAAGTTTCCCGAATATGACAATACGATGCCACTCTGTCTGTTCTTT 36640 ||||||||||| || | ||| ||||| || || | ||| ||||| || || | ||| Sbjct 236 CCCTGCAACTTCAGCTAATTTGCCGAAAATAACCACACGGTGCCATTCGGTTTTTTCACG 177 Query 36641 CTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGATGTTGCAACGGAAATGTTGACAAT 36700 | | || || || ||||| || ||| ||||| ||||| | | | ||| | | Sbjct 176 CATCTCACCGGTTTGCTTGTCACGCCAACTTTCAGAAGTTGCCAGAGTCAGGTTTGCCAC 117 Query 36701 TGCAGAACC-TGATGCTGAATATTTAAC----TTCAGGGTCGTTTCCGAGAGTTCCGACA 36755 || || | | || || |||| |||||| || | || || | |||| | Sbjct 116 CGCTCCGCCGTTAGGC-----ATATAACGGATTTCAGGATCTTGCCCTAGGTTACCGATA 62 Query 36756 ATAATTACTTTATTTACGCC---GCGTGCCATTTATTA 36790 | |||||||||||||||||| || ||||||||||| Sbjct 61 AGAATTACTTTATTTACGCCTCTGCTGGCCATTTATTA 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151842472635528