Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq30817 156 1e-33 >seq30817 Length=4284 Score = 156 bits (172), Expect = 1e-33 Identities = 251/359 (70%), Gaps = 5/359 (1%) Strand=Plus/Minus Query 26638 CCACCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCC 26697 ||||| | ||||||||| | || |||| || | ||||| || || | ||||| Sbjct 373 CCACCTAACATTTGCATTGAGCCGCCAATATTCACAACCACTTCTGTTGTATAGCGATCT 314 Query 26698 TGTCTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAA 26757 || | |||||| ||||||||||| | ||| | || ||||| | ||| || | || Sbjct 313 TGACCGCTTTGGTCCTGCCATTTACGTGTTTGTAACGAACCTTCGATATAGACTTGTGAG 254 Query 26758 CCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGC 26817 |||||| ||| || || | |||| ||| || | ||| ||| || |||||||||||| Sbjct 253 CCTTTTTTCAGGTATTCCCCTGCAACTTCAGCTAATTTGCCGAAAATAACCACACGGTGC 194 Query 26818 CACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCA 26877 || || || | || ||| || |||||||| |||||||| ||| || || || Sbjct 193 CATTCGGTTTTTTCACGCATCTCACCGGTTTGCTTGTCACGCCAACTTTCAGAAGTTGCC 134 Query 26878 ACTGTAAGGTTTGCAAATGCCGTTC--CTGATGGGTGAATATCTGATTTCTGGATCATGC 26935 | || |||||||| | ||| || | | | || ||| | |||||| ||||| ||| Sbjct 133 AGAGTCAGGTTTGCCA---CCGCTCCGCCGTTAGGCATATAACGGATTTCAGGATCTTGC 77 Query 26936 CCAAGGCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATTTATGCCGCCTG 26994 || ||| ||| |||| || || ||||||||||||||||| ||||||||| | |||| Sbjct 76 CCTAGGTTACCGATAAGAATTACTTTATTTACGCCTCTGCTGGCCATTTATTACTCCTG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129091341725340