Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq34035 165 2e-35 seq116239 145 2e-29 seq65437 93.3 9e-14 seq98857 89.7 1e-12 seq26843 86.0 1e-11 >seq34035 Length=19351 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || ||||||||||| | ||| || || |||||||||||||| || |||| Sbjct 10584 ACCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGA 10525 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || |||||||| |||||||| || || || || ||||||||||| || || Sbjct 10524 TAAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGG 10465 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || || ||||||||||| ||||| || | || || || || || | |||||| Sbjct 10464 AATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || ||||| || || | ||| ||||| ||||||||||| || Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354 >seq116239 Length=11340 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| |||| ||| | ||| ||| ||||| |||||||| || | Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || | |||||||| | ||| || || ||||| |||||||||||||| || ||| Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||| ||||||||||| || | || || ||||| || | || || Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACC 4731 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | || || || || || || ||||| || || || ||||||||||| Sbjct 4732 TCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781 >seq65437 Length=5556 Score = 93.3 bits (102), Expect = 9e-14 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 301609 GAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACC 301668 ||||| ||| | | |||| ||| || || || || |||||| |||| ||||| || Sbjct 3641 GAAAAAGAAAGAAATGGTAAATATGGAGGTAAAACTGTACAAGTTATTCCTCACATTACT 3700 Query 301669 GATGAAATCAAAAGAAGAATTCACATTGCGGC---TGAAA---AATCAGATATACTTATT 301722 ||||||| ||| || |||| | | || | ||||| || ||||| || ||||| Sbjct 3701 AATGAAATAAAACAAAAAATTTATAAAGCAGAAGTTGAAAGTAAAGCAGATGTAGTTATT 3760 Query 301723 GGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGC 301775 ||||||||||||||| || |||||||| ||||| | || ||| ||||||| Sbjct 3761 ACAGAAATTGGAGGAACTGTTGGAGATATTGAATCTCAACCATTTTTAGAAGC 3813 >seq98857 Length=3708 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || |||||||||||||| |||| || || | ||| | || ||||| || | | | Sbjct 585 TCCTTTTGGATGTTGTAATCAGATCATGTACGACTATCTTAGAGCTGTTTTCCTTCGACG 644 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || || | |||||| || ||||| |||||||| ||||| ||||| || || | | Sbjct 645 ATTAATCTTTGTTGATCTAGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTAATATTT 704 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || | || ||| ||| |||| ||| ||||| || || | || || |||||||| Sbjct 705 TCAATTCTATCGAAAGGTTCAACTTTGAGGGTGATTGTTTTTCTAGTTAATGTCTTAACA 764 Query 283089 AATATCTGCATT 283100 || || |||||| Sbjct 765 AAGATTTGCATT 776 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 |||||||| || | ||||| || | |||||| || ||||| ||||||||||||||| Sbjct 30 AGTTGTTTTCCTTCGAAGATTAATCTTTGTTGATCTGGAGGAATTCCCTCCTTGTCTTGG 89 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 |||||||| || || | || || || || || | ||| || ||||| ||||| || || Sbjct 90 ATCTTTGCCTTAACATTTTCAATTGTATCGGATGGTTCAACCTCGAGGGTGATTGTTTTT 149 Query 283071 CCCGTCAAAGT 283081 || || || || Sbjct 150 CCAGTTAATGT 160 >seq26843 Length=8439 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2783 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1044951548046276