Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq34035 165 2e-35
seq116239 145 2e-29
seq65437 93.3 9e-14
seq98857 89.7 1e-12
seq26843 86.0 1e-11
>seq34035
Length=19351
Score = 165 bits (182), Expect = 2e-35
Identities = 175/231 (76%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || ||||||||||| | ||| || || |||||||||||||| || ||||
Sbjct 10584 ACCTCCTCGAAGGCGAAGTACTAAATGCAAAGTTGACTCTTTTTGGATGTTATAATCAGA 10525
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || || |||||||| |||||||| || || || || ||||||||||| || ||
Sbjct 10524 TAAGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATTAAACGTTGTTGATCTGGAGG 10465
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||| || || ||||||||||| ||||| || | || || || || || | ||||||
Sbjct 10464 AATACCTTCTTTATCTTGGATCTTAGCTTTAACATTTTCAATTGTATCAGAGGGTTCGAC 10405
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || || || ||||| || || | ||| ||||| ||||||||||| ||
Sbjct 10404 CTCAAGTGTTATGGTCTTCCCTGTAAGAGTTTTAACAAATATCTGCATATT 10354
>seq116239
Length=11340
Score = 145 bits (160), Expect = 2e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || ||||| |||| ||| | ||| ||| ||||| |||||||| || |
Sbjct 4552 CCACCGCGTAGACGAAGAACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAATCCGAC 4611
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| || | |||||||| | ||| || || ||||| |||||||||||||| || |||
Sbjct 4612 AATGTCCTACCATCCTCCAATTGCTTTCCAGCAAAAATCAAACGTTGTTGATCTGGTGGA 4671
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || ||||||||||| ||||||||||| || | || || ||||| || | || ||
Sbjct 4672 ATGCCTTCCTTGTCTTGAATCTTTGCTTTAACATTTTCAATTGTGTCAGACGGCTCAACC 4731
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| | || || || || || || ||||| || || || |||||||||||
Sbjct 4732 TCCAATGTAATTGTTTTTCCAGTTAAAGTTTTTACAAAAATCTGCATTTT 4781
>seq65437
Length=5556
Score = 93.3 bits (102), Expect = 9e-14
Identities = 125/173 (72%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 301609 GAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCACATCACC 301668
||||| ||| | | |||| ||| || || || || |||||| |||| ||||| ||
Sbjct 3641 GAAAAAGAAAGAAATGGTAAATATGGAGGTAAAACTGTACAAGTTATTCCTCACATTACT 3700
Query 301669 GATGAAATCAAAAGAAGAATTCACATTGCGGC---TGAAA---AATCAGATATACTTATT 301722
||||||| ||| || |||| | | || | ||||| || ||||| || |||||
Sbjct 3701 AATGAAATAAAACAAAAAATTTATAAAGCAGAAGTTGAAAGTAAAGCAGATGTAGTTATT 3760
Query 301723 GGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGC 301775
||||||||||||||| || |||||||| ||||| | || ||| |||||||
Sbjct 3761 ACAGAAATTGGAGGAACTGTTGGAGATATTGAATCTCAACCATTTTTAGAAGC 3813
>seq98857
Length=3708
Score = 89.7 bits (98), Expect = 1e-12
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| |||||||||||||| |||| || || | ||| | || ||||| || | | |
Sbjct 585 TCCTTTTGGATGTTGTAATCAGATCATGTACGACTATCTTAGAGCTGTTTTCCTTCGACG 644
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|| || | |||||| || ||||| |||||||| ||||| ||||| || || | |
Sbjct 645 ATTAATCTTTGTTGATCTAGAGGAATTCCCTCCTTATCTTGAATCTTGGCCTTAATATTT 704
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| || | || ||| ||| |||| ||| ||||| || || | || || ||||||||
Sbjct 705 TCAATTCTATCGAAAGGTTCAACTTTGAGGGTGATTGTTTTTCTAGTTAATGTCTTAACA 764
Query 283089 AATATCTGCATT 283100
|| || ||||||
Sbjct 765 AAGATTTGCATT 776
Score = 87.8 bits (96), Expect = 4e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010
|||||||| || | ||||| || | |||||| || ||||| |||||||||||||||
Sbjct 30 AGTTGTTTTCCTTCGAAGATTAATCTTTGTTGATCTGGAGGAATTCCCTCCTTGTCTTGG 89
Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070
|||||||| || || | || || || || || | ||| || ||||| ||||| || ||
Sbjct 90 ATCTTTGCCTTAACATTTTCAATTGTATCGGATGGTTCAACCTCGAGGGTGATTGTTTTT 149
Query 283071 CCCGTCAAAGT 283081
|| || || ||
Sbjct 150 CCAGTTAATGT 160
>seq26843
Length=8439
Score = 86.0 bits (94), Expect = 1e-11
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 2783 TAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1044951548046276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |