Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_032111.1
Length=163005
Score E
Sequences producing significant alignments: (Bits) Value
seq50502 205 1e-47
seq3775 170 2e-37
>seq50502
Length=11567
Score = 205 bits (226), Expect = 1e-47
Identities = 200/258 (78%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831
|||| ||||||| || ||||||| | || |||||||| ||||||| ||||||||| ||
Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171
Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891
||| ||||| ||||||||||| | ||||||| | ||| || || | | ||||| ||
Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231
Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951
| | | |||||| || |||||||||||| || ||||| || || | ||||| | ||
Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291
Query 23952 AAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAAC 24011
|||||| | ||| || | | |||||||| ||| | | ||||||||||||||||||||
Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351
Query 24012 TTCATCAACTGTCCAAAA 24029
||| ||||||||||||||
Sbjct 5352 TTCTTCAACTGTCCAAAA 5369
Score = 167 bits (184), Expect = 2e-36
Identities = 197/267 (74%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 23490 TAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAA 23549
||||| ||| |||| ||||||||||||||||||||| || |||||||| | ||| ||
Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816
Query 23550 TTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGC 23609
|||||| ||||||||||| || ||||||| |||||||||||| | ||||||||| || ||
Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876
Query 23610 AAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA 23669
||| ||| ||||||||| || |||||||| ||||| || | || | | ||| ||
Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936
Query 23670 TGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTC 23729
| ||| | | | ||||||| | | ||||| || || ||| ||||||
Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996
Query 23730 AATTGTTTCAATTGCTTTTAAGAGAAA 23756
| ||||||||| || || || || ||
Sbjct 4997 TAATGTTTCAATAGCATTGAAAAGGAA 5023
>seq3775
Length=22988
Score = 170 bits (188), Expect = 2e-37
Identities = 299/425 (70%), Gaps = 13/425 (3%)
Strand=Plus/Minus
Query 128483 ATATATACCAGGTAAAAGAAAATGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATC 128542
|||| |||||| |||||| |||||||| | || | |||||| | | | |||
Sbjct 6684 ATATCAACCAGGAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACA 6625
Query 128543 AATGGCAGATTCTGCTGATTTAGTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATA 128602
|||||||||| |||||||||| ||||| || || |||| ||||||| ||| |||| |
Sbjct 6624 AATGGCAGATACTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAA-- 6567
Query 128603 TGGAGGAATAAAATCTATATTTCTTATGGGATGTTATGATAAAGAAACAGATACATGGAA 128662
|| || || | |||||| | ||||||||||||||| ||||| ||| ||||||
Sbjct 6566 -GGTGGCATGTTAAGTATATTCTTAATGGGATGTTATGATTCTAAAACAAATATATGGAA 6508
Query 128663 AACTGTTACAAAA-TGC--TCAGGGTTTAATGATGAAACATTAAAAGAATTACAATC--A 128717
||| || |||||| | | ||||| || ||||| | || | || || | ||||| |
Sbjct 6507 AACAGTAACAAAAGTTCATTCAGGTTTAGATGATAATGCAATGAATAAACTTCAATCTGA 6448
Query 128718 ATTGATATGATTAA-AATTAGTAAAAATAAAGATAAAATTCCAAATTGG-TTAATTATTA 128775
||| | |||| | | | | || |||| | ||||| ||| || | | |
Sbjct 6447 ATTACAACCTTTAATGGTCCGAATAGATTCAGATTGTTTACCAAAATGGATTTCATGTAA 6388
Query 128776 ACAGTATTCATTATCCGGATTTTATTATC-AAAGATCCAAAATCATCTCCTGTTTGGGAA 128834
| | | ||| | |||||||||| ||| | ||||||||| | || ||||||||||||
Sbjct 6387 AAAACAATCAAT-TCCGGATTTT-TTAGCAAAAGATCCAGTAACAATGCCTGTTTGGGAA 6330
Query 128835 ATAATTGGATATGAATTTACAAAATCACCATCTCATACAGCGAATGGAATATCAATTAGG 128894
|||| |||| ||||||| ||||| | | | |||||||| |||||||| ||||| ||
Sbjct 6329 ATAACTGGAGCTGAATTTTCAAAAGCTGAAGCACATACAGCAAATGGAATTTCAATAAGA 6270
Query 128895 TTTCC 128899
|||||
Sbjct 6269 TTTCC 6265
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 520619109731600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |