Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq50502 205 1e-47 seq3775 170 2e-37 >seq50502 Length=11567 Score = 205 bits (226), Expect = 1e-47 Identities = 200/258 (78%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| ||||||| || ||||||| | || |||||||| ||||||| ||||||||| || Sbjct 5112 ATCTTTTATATACGTGTCAATTAAAATGCTGTACATTTCTGAATGAACATTTTCAATTGC 5171 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 ||| ||||| ||||||||||| | ||||||| | ||| || || | | ||||| || Sbjct 5172 AATTTGAAAGCCATAAAAACAACGTGCTTCAGTAATTTGTACTTCTTGACCAAATCGTTC 5231 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 | | | |||||| || |||||||||||| || ||||| || || | ||||| | || Sbjct 5232 AACAAGATTTTCATTTACAATACCATCAGAGGCTGCAAAAAATGCTAAAACATGTGAAAT 5291 Query 23952 AAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAAC 24011 |||||| | ||| || | | |||||||| ||| | | |||||||||||||||||||| Sbjct 5292 AAAATGACGTTCTCCACTAGTTAATTTTTCCCAGTGAGCCATATCTTTTGATAAATCAAC 5351 Query 24012 TTCATCAACTGTCCAAAA 24029 ||| |||||||||||||| Sbjct 5352 TTCTTCAACTGTCCAAAA 5369 Score = 167 bits (184), Expect = 2e-36 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 23490 TAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAA 23549 ||||| ||| |||| ||||||||||||||||||||| || |||||||| | ||| || Sbjct 4757 TAAATGCTTGAACATTAAACATGCAAAATCACAATGAAGTCCTTCATCACGTGAAATTAA 4816 Query 23550 TTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGC 23609 |||||| ||||||||||| || ||||||| |||||||||||| | ||||||||| || || Sbjct 4817 TTCATTTGAAAATGTTAAACCAGGCATTATTCCTCGTTTTTTTAACCAAAATATAGCTGC 4876 Query 23610 AAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAA 23669 ||| ||| ||||||||| || |||||||| ||||| || | || | | ||| || Sbjct 4877 AAAACTTCCACTAAAGAAAATTCCTTCAACAGCAGCAAAAGCAATAATTCTTTCACCGAA 4936 Query 23670 TGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTC 23729 | ||| | | | ||||||| | | ||||| || || ||| |||||| Sbjct 4937 ATTAGCAGATTTACTTGCAATCCATGATAAAGCCCAATCGGCTTTTTTTTTAACACACGG 4996 Query 23730 AATTGTTTCAATTGCTTTTAAGAGAAA 23756 | ||||||||| || || || || || Sbjct 4997 TAATGTTTCAATAGCATTGAAAAGGAA 5023 >seq3775 Length=22988 Score = 170 bits (188), Expect = 2e-37 Identities = 299/425 (70%), Gaps = 13/425 (3%) Strand=Plus/Minus Query 128483 ATATATACCAGGTAAAAGAAAATGGTTAAAGGTAAAAAGGGATTATTTAAATAATGGATC 128542 |||| |||||| |||||| |||||||| | || | |||||| | | | ||| Sbjct 6684 ATATCAACCAGGAAAAAGAGGTTGGTTAAAAATTAAGAAAGATTATCTTTTTGAAGGACA 6625 Query 128543 AATGGCAGATTCTGCTGATTTAGTTGTGTTGGGTGCATATTATGGTAAAGGTAAAAGATA 128602 |||||||||| |||||||||| ||||| || || |||| ||||||| ||| |||| | Sbjct 6624 AATGGCAGATACTGCTGATTTGGTTGTCTTAGGAGCATGGTATGGTACAGGGAAAAAA-- 6567 Query 128603 TGGAGGAATAAAATCTATATTTCTTATGGGATGTTATGATAAAGAAACAGATACATGGAA 128662 || || || | |||||| | ||||||||||||||| ||||| ||| |||||| Sbjct 6566 -GGTGGCATGTTAAGTATATTCTTAATGGGATGTTATGATTCTAAAACAAATATATGGAA 6508 Query 128663 AACTGTTACAAAA-TGC--TCAGGGTTTAATGATGAAACATTAAAAGAATTACAATC--A 128717 ||| || |||||| | | ||||| || ||||| | || | || || | ||||| | Sbjct 6507 AACAGTAACAAAAGTTCATTCAGGTTTAGATGATAATGCAATGAATAAACTTCAATCTGA 6448 Query 128718 ATTGATATGATTAA-AATTAGTAAAAATAAAGATAAAATTCCAAATTGG-TTAATTATTA 128775 ||| | |||| | | | | || |||| | ||||| ||| || | | | Sbjct 6447 ATTACAACCTTTAATGGTCCGAATAGATTCAGATTGTTTACCAAAATGGATTTCATGTAA 6388 Query 128776 ACAGTATTCATTATCCGGATTTTATTATC-AAAGATCCAAAATCATCTCCTGTTTGGGAA 128834 | | | ||| | |||||||||| ||| | ||||||||| | || |||||||||||| Sbjct 6387 AAAACAATCAAT-TCCGGATTTT-TTAGCAAAAGATCCAGTAACAATGCCTGTTTGGGAA 6330 Query 128835 ATAATTGGATATGAATTTACAAAATCACCATCTCATACAGCGAATGGAATATCAATTAGG 128894 |||| |||| ||||||| ||||| | | | |||||||| |||||||| ||||| || Sbjct 6329 ATAACTGGAGCTGAATTTTCAAAAGCTGAAGCACATACAGCAAATGGAATTTCAATAAGA 6270 Query 128895 TTTCC 128899 ||||| Sbjct 6269 TTTCC 6265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520619109731600