Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29] 133,294 sequences; 516,230,974 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq21713 145 1e-29 seq32061 140 4e-28 >seq21713 Length=22343 Score = 145 bits (160), Expect = 1e-29 Identities = 295/433 (68%), Gaps = 10/433 (2%) Strand=Plus/Minus Query 50475 GGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT 50534 || ||||| || ||||| || |||||||||||||| || || || || || | || Sbjct 18666 GGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAATATAAAACA 18607 Query 50535 TGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGTTG 50594 || || |||||||| || || || | |||||| | | || | || | | Sbjct 18606 TGTCACAGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCATCGAGCAAATT 18547 Query 50595 AAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGAT 50654 || || || || | ||| | || ||| | |||||||| |||||||||| ||| || | Sbjct 18546 AACACCAATCCAAATGATAGACGAATTATTATGACCGCTTGGAATCCAATCGACATTCCT 18487 Query 50655 CAAACCGTTTTACCTCCGTGTCAT-GTTTTATGTCAATTTTA--TGCCACA--GACAATG 50709 ||| | ||||||| || ||| || |||| ||||||||| || | | || ||| Sbjct 18486 AAAATGGCACTACCTCCTTGCCATTGTCTTAT-TCAATTTTACGTGGCTAATGGAGAAT- 18429 Query 50710 TTTTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769 |||| ||||| | |||||||||||||| ||||||||| | || || ||||| || Sbjct 18428 ---TATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGGAGTGCCTTTTAATA 18372 Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAG 50829 |||| ||| ||||| | || || |||| ||||| | || | || || |||| Sbjct 18371 TAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACAAATTTAAAGCCTGGAG 18312 Query 50830 AATTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAAGG 50889 | ||| | || || ||||| || |||||| |||| | |||| | || | |||| | Sbjct 18311 ATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATATTGAGCCGCTAAAAG 18252 Query 50890 AGCAATTGACTCG 50902 ||||||||| ||| Sbjct 18251 AGCAATTGAATCG 18239 >seq32061 Length=38618 Score = 140 bits (154), Expect = 4e-28 Identities = 211/296 (71%), Gaps = 8/296 (3%) Strand=Plus/Plus Query 156156 GCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAAT 156215 || ||| ||| |||||||||| |||||||| |||||||| |||||||| | ||| | Sbjct 16038 GCGTCTGCAAATAATCGTCTGATATTAGCTTCAGATTCACCAACATATTTATCTAAAACC 16097 Query 156216 TCAGGACCGTTAACTATTTTGACGGGTCGTGA---TTTAAAAGCTTG-AGCGATACAGCG 156271 | ||||| || || ||||| ||| || || ||||| | ||| | | || || Sbjct 16098 TGTGGACCATTTACAATTTT--CGGTTCACGAGCATTTAACA--TTGTACCAATTTGTCG 16153 Query 156272 AGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTT 156331 |||||||| |||||||| ||||||||||| | || || | ||||| | ||| || Sbjct 16154 GGCCATTAAAGTTTTACCAGTTCCAGGAGGTCCAAACAATAAAATACCTTTAACATGCTT 16213 Query 156332 ACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAA 156391 ||| ||||||| ||| || ||| || | | || ||||||||||||| || ||| Sbjct 16214 ACATCCTAATTGCTCAACTAATTCAGGTGGGAATACTCGTGAAGCAAATGCTCGTCTAAA 16273 Query 156392 AATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447 || | |||||||| |||||||| || | |||||||| |||||| ||||| Sbjct 16274 TATAGCATTGAATTCTTTGTCCAATCCACCAATACCCATTTTTCCAAAATCCCAAT 16329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665963735978640