Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Holcocephala_20fusca_20[genbank_20GCA_5F001015215.1_202015-05-29]
133,294 sequences; 516,230,974 total letters
Query= NC_033423.1
Length=208501
Score E
Sequences producing significant alignments: (Bits) Value
seq21713 145 1e-29
seq32061 140 4e-28
>seq21713
Length=22343
Score = 145 bits (160), Expect = 1e-29
Identities = 295/433 (68%), Gaps = 10/433 (2%)
Strand=Plus/Minus
Query 50475 GGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT 50534
|| ||||| || ||||| || |||||||||||||| || || || || || | ||
Sbjct 18666 GGCGATTTGGGCCCTGTATATGGTTTTCAATGGAGGCACTTAGGGGCAGAATATAAAACA 18607
Query 50535 TGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGTTG 50594
|| || |||||||| || || || | |||||| | | || | || | |
Sbjct 18606 TGTCACAGTAATTACGATGGACAGGGAATTGATCAATTAAAGCAAGTCATCGAGCAAATT 18547
Query 50595 AAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGAT 50654
|| || || || | ||| | || ||| | |||||||| |||||||||| ||| || |
Sbjct 18546 AACACCAATCCAAATGATAGACGAATTATTATGACCGCTTGGAATCCAATCGACATTCCT 18487
Query 50655 CAAACCGTTTTACCTCCGTGTCAT-GTTTTATGTCAATTTTA--TGCCACA--GACAATG 50709
||| | ||||||| || ||| || |||| ||||||||| || | | || |||
Sbjct 18486 AAAATGGCACTACCTCCTTGCCATTGTCTTAT-TCAATTTTACGTGGCTAATGGAGAAT- 18429
Query 50710 TTTTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACG 50769
|||| ||||| | |||||||||||||| ||||||||| | || || ||||| ||
Sbjct 18428 ---TATCATGTCAGTTGTATCAAAGATCAGCAGATATGGGTCTTGGAGTGCCTTTTAATA 18372
Query 50770 TAGCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAG 50829
|||| ||| ||||| | || || |||| ||||| | || | || || ||||
Sbjct 18371 TAGCAAGTTATGCTTTGCTCACTTACATGATAGCTCACATCACAAATTTAAAGCCTGGAG 18312
Query 50830 AATTTATTCATACGTTAGGAGACGCTCATATTTACCTCGATCACGTCGATGCTTTAAAGG 50889
| ||| | || || ||||| || |||||| |||| | |||| | || | |||| |
Sbjct 18311 ATTTTGTGCACACCTTAGGCGATGCTCATGTTTATTTAAATCATATTGAGCCGCTAAAAG 18252
Query 50890 AGCAATTGACTCG 50902
||||||||| |||
Sbjct 18251 AGCAATTGAATCG 18239
>seq32061
Length=38618
Score = 140 bits (154), Expect = 4e-28
Identities = 211/296 (71%), Gaps = 8/296 (3%)
Strand=Plus/Plus
Query 156156 GCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAAT 156215
|| ||| ||| |||||||||| |||||||| |||||||| |||||||| | ||| |
Sbjct 16038 GCGTCTGCAAATAATCGTCTGATATTAGCTTCAGATTCACCAACATATTTATCTAAAACC 16097
Query 156216 TCAGGACCGTTAACTATTTTGACGGGTCGTGA---TTTAAAAGCTTG-AGCGATACAGCG 156271
| ||||| || || ||||| ||| || || ||||| | ||| | | || ||
Sbjct 16098 TGTGGACCATTTACAATTTT--CGGTTCACGAGCATTTAACA--TTGTACCAATTTGTCG 16153
Query 156272 AGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTT 156331
|||||||| |||||||| ||||||||||| | || || | ||||| | ||| ||
Sbjct 16154 GGCCATTAAAGTTTTACCAGTTCCAGGAGGTCCAAACAATAAAATACCTTTAACATGCTT 16213
Query 156332 ACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAA 156391
||| ||||||| ||| || ||| || | | || ||||||||||||| || |||
Sbjct 16214 ACATCCTAATTGCTCAACTAATTCAGGTGGGAATACTCGTGAAGCAAATGCTCGTCTAAA 16273
Query 156392 AATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447
|| | |||||||| |||||||| || | |||||||| |||||| |||||
Sbjct 16274 TATAGCATTGAATTCTTTGTCCAATCCACCAATACCCATTTTTCCAAAATCCCAAT 16329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665963735978640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |