Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq38 107 2e-18 seq254 91.5 2e-13 seq316 84.2 3e-11 >seq38 Length=3890971 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 71792 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 71851 |||||||||| ||| || || |||||||| ||||| ||| ||||| || ||| | || Sbjct 2747231 TTTCCAGACACTGTAGACTTTTGTGAGCGGATGGCCAACAGTGGAAAGATTGTTGTGGTG 2747172 Query 71852 GCCGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATCTTGGATCTTATTCCA 71911 || ||||| |||||||| | || || || || |||||| || | || | || Sbjct 2747171 GCAGCACTGGATGGGACGTACCAGCGGCAAGGCTTCGGGAATATCCTGAACCTGGTGCCT 2747112 Query 71912 TTATCTGAAATGGTGGTAAAACTAACTGCAGTGTGTATGAAATGCTTTAAGGAGGCGTCC 71971 || |||| | || | ||||| || || ||||||||| |||||| || ||||||||| Sbjct 2747111 CTAGCTGAGAACGTTATCAAACTTACCGCTGTGTGTATGTCATGCTTCAATGAGGCGTCC 2747052 Query 71972 TTTTCTAAACGATTAGG 71988 || | || |||||||| Sbjct 2747051 TTCACCAAGCGATTAGG 2747035 >seq254 Length=3229631 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 ||||| | |||||| || || ||||||| || || ||||||||||| || ||||| ||| Sbjct 2122675 TTAGAGAGATCCACCTCCTCAGCTGTCCAGAACGAGGCCTCTGCCTTCTTGTACATTTTC 2122734 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 24718 |||||||||||||||| ||| || || | || ||||| Sbjct 2122735 CAGATGTCATGATATTCAATAGGGAACACCACGAATCT 2122772 >seq316 Length=1680448 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/209 (70%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 21881 AGTCCGGTTGATCCAAACCCTTGATCTCCTCTATCTGTAC-----TATCTAGAGATTGTA 21935 ||||| ||||||||||| |||| |||||||| |||| | || | |||||| Sbjct 1398030 AGTCCTGTTGATCCAAATCCTTTCGCTCCTCTAACTGTGCATTTTAATTTGTCAATTGTA 1398089 Query 21936 CTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCG 21995 || ||| ||| ||||| |||| |||| | | ||||| || || ||||| ||||| Sbjct 1398090 ATTTCCTCAATTCAGGATAGAATATGCGTTCACATATTAGTTGTGCAATTCTGTCCCCAA 1398149 Query 21996 TATTTACATTAAATGTATATTTTCCATTA--TTAATAAGAATGACTCCTATATTTCCCCT 22053 ||||||| ||||| | | || || | | || || ||| || || ||||| || | Sbjct 1398150 TATTTACTTTAAA-CTCGGTACTCGATAAATTAAACAATAAT-ACACCAATATTGCCTCA 1398207 Query 22054 ATAATCTTCGTCTATTACACCGCCTCCTA 22082 |||||||| || || ||||| |||||| Sbjct 1398208 ATAATCTTTATCAATAACACCAGCTCCTA 1398236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593266141317600