Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq154 95.1 1e-14 seq204 91.5 1e-13 seq1481 82.4 6e-11 >seq154 Length=1683969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | || |||| || | || |||||||| || ||||| ||||| | Sbjct 579795 CCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 579736 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || ||||||||||| || || | || |||| ||||||||| || Sbjct 579735 AGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 579676 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | | |||||| ||||| | Sbjct 579675 ATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACT 579616 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| ||||| || || || | ||||| || || || ||||| Sbjct 579615 TCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 >seq204 Length=3085492 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 |||||||||||||| | ||||| || | ||||||||||| || ||||||||||| | | Sbjct 1220939 CCCCCTCGCAGCCTCAACACCAAGTGAAGTGTGGACTCCTTCTGGATGTTATAGTCAGAC 1220880 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 | || | | || |||| |||||| || ||| |||| ||||||||||| || Sbjct 1220879 AATGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAGTCTCTGCTGATC 1220827 >seq1481 Length=432034 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||||| | || | |||||||||||||||||||| || || | Sbjct 222096 CCACCTCTCAGACGCAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAA 222155 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||| |||||| || ||| |||| | |||||||||||| ||| Sbjct 222156 AGTGTGCGACCATCTTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGGG 222215 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||| ||||| |||||| Sbjct 222216 ATTCCTTCTTTGTCTTGGATCTT 222238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421943372550920