Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq254 156 4e-33 seq154 118 1e-21 >seq254 Length=3229631 Score = 156 bits (172), Expect = 4e-33 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| ||||||||||| || ||||| || ||||| || || || ||||| ||| | Sbjct 2115973 TGTTCAACGCCATCGAAACAATGCCCTGTGTCAAGCGCAAAGCTGATTGGGCATTGCAGT 2115914 Query 117006 GGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 |||||||| || |||| || | || || ||||| | || || ||||| || |||||| Sbjct 2115913 GGATCGCCAGC-GAGACCGCAACGTTTGGTGAGCGTATTGTAGCGTTCGCTGCAGTCGAG 2115855 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 || ||||||| || || || ||||| |||| || ||||||||||| || ||||||||| Sbjct 2115854 GGTATCTTCTTCTCCGGTAGCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATG 2115795 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||||| || || |||||||| || || ||||| | ||||||| Sbjct 2115794 CCCGGACTAACCTTCAGCAATGAACTGATCTCACGTGACGAGG 2115752 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||| |||| |||||||| ||| | |||||| | ||||| || |||| | ||| Sbjct 2122799 GAGCCACTGTTGCGTGAGAACCCACGCAGATTCGTGGTGTTCCCTATTGAATATCATGAC 2122740 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| |||||||| ||||| ||||| ||||||||||| | ||||||||||| || Sbjct 2122739 ATCTGGAAAATGTACAAGAAGGCAGAGGCCTCGTTCTGGACAGCTGAGGAGGTGGATCTC 2122680 Query 116696 TCCAAGG 116702 || |||| Sbjct 2122679 TCTAAGG 2122673 >seq154 Length=1683969 Score = 118 bits (130), Expect = 1e-21 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| ||||| || || || |||||||||||| | || || || |||| | Sbjct 579569 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGA-GCCATC 579627 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | |||| || || | || || || || || || | ||||| Sbjct 579628 CGATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCA 579687 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| ||| || ||||||||||| || | || |||||| |||||||| Sbjct 579688 GCAGCGACTCATCTTCGCTGGTAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAA 579747 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 579748 CATCCAGAAGGAGTCGACCCTCCA 579771 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || || ||||| ||||| | || || || |||| | Sbjct 578376 ATGCAGATCTTCGTGAAGACATTGACTGGTAAAACTATCACTTTAGAAGTTGA-GCCATC 578434 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | |||||| || |||| || || || || || || | ||||| Sbjct 578435 CGATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGACCA 578494 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| ||| || || || ||||| || | || |||||| ||||||||| Sbjct 578495 GCAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTCTCCGACTACAA 578554 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 578555 CATCCAGAAGGAGTCAACCCTCCA 578578 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| | || || || | | Sbjct 578604 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCT 578663 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | || | ||||| | || ||||| || || ||| | ||||| Sbjct 578664 GATACCATCGAGAACG-TAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGACCA 578722 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| ||| || || |||||||| || | || |||||| ||||||||| Sbjct 578723 GCAGCGACTCATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAA 578782 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 578783 TATCCAGAAGGAGTCAACCCTCCA 578806 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || || ||||||||||| | || || | ||||| | Sbjct 580025 ATGCAGATCTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTG-AGCCATC 580083 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | |||||| || |||| || || || || || ||| | || || Sbjct 580084 CGATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCA 580143 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||| || || |||||||| || | || |||||| |||||||| Sbjct 580144 GCAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAA 580203 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 580204 CATCCAGAAGGAGTCAACCCTCCA 580227 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || ||||||||||| | || || || |||| | Sbjct 579797 ATGCAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGA-GCCATC 579855 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | |||||| ||||||| || || || || || || | ||||| Sbjct 579856 TGATACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCA 579915 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| ||| || || || ||||| || | || ||||| |||||||| Sbjct 579916 GCAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAA 579975 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| ||| |||| || || Sbjct 579976 CATCCAGAAAGAGTCCACCCTCCA 579999 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || || |||||||||||| | || || || |||| | Sbjct 578832 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGA-GCCATC 578890 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | |||| || || | || || || || || || | ||||| Sbjct 578891 TGATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCA 578950 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||||||||| ||| || || |||||||| || | || || || |||||||| Sbjct 578951 GCAGCGACTCATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACTCTGTCTGACTACAA 579010 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| ||| |||| || || Sbjct 579011 CATCCAGAAAGAGTCCACCCTCCA 579034 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || || ||| | || || || |||| | Sbjct 580253 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACAATTACCTTGGAGGTTGA-GCCATC 580311 Query 40750 -GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| |||||| ||| ||| || || || || || || | ||||| Sbjct 580312 TGATACCATTGAAAATGTCAAGGCTAAAGTTCAAGATAAGGAAGGAATTCCTCCAGACCA 580371 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||||| |||| ||| || || ||||| || || | || ||||| |||||||| Sbjct 580372 GCAGCGACTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTTTCGGACTACAA 580431 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||| |||| Sbjct 580432 CATCCAGAAGGAATCTACACTTCATTTAGT 580461 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 40786 AAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGAC 40845 || || || || || | |||||||| ||||| |||| ||| || || |||||||| || Sbjct 578244 AAGGAAGGAATTCCTCCAGACCAGCAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGAT 578303 Query 40846 GAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 | || |||||| |||||||||||||||||||||| | || || || Sbjct 578304 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTCCA 578350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514823962471200