Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2593 127 3e-24 seq125 122 1e-22 seq255 118 2e-21 seq1141 111 2e-19 seq1884 104 4e-17 seq2032 95.1 2e-14 seq1481 95.1 2e-14 seq110 89.7 8e-13 seq1415 86.0 9e-12 seq727 84.2 3e-11 >seq2593 Length=101637 Score = 127 bits (140), Expect = 3e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171880 TTCtttttttATTTTATATTCACCATGTTTTCTAATATTTGGTAAAACTTCATTAGTTAT 171939 ||| ||| || |||||||||||||| |||||||||| ||||||||||| ||||| || Sbjct 83198 TTCGTTTCGTAATTTATATTCACCATATTTTCTAATAGAGGGTAAAACTTCTTTAGTAAT 83139 Query 171940 CCATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAATTAATGAATATAATCC 171999 ||| |||||||||| ||| |||| | ||| || ||| ||||||||| ||||||| || Sbjct 83138 CCACTTTTTAAATAATTTTGCTTTTTCTTTATTTGATCTTAAAATTAAGGAATATAGACC 83079 Query 172000 AGATTCTGATATATAAATAGTAtttttttCATTAT 172034 ||||| || |||| || |||| |||| ||| Sbjct 83078 TGATTCATTAATGAAAATTGTGTTTTCTTCAATAT 83044 >seq125 Length=2418692 Score = 122 bits (134), Expect = 1e-22 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 171880 TTCtttttttATTTTATATTCACCATGTTTTCTAATATTTGGTAAAACTTCATTAGTTAT 171939 ||| |||| || ||||||||| |||| |||||||||| ||||||||||| ||||| || Sbjct 2277402 TTCATTTTGTAATTTATATTCGCCATATTTTCTAATAGAGGGTAAAACTTCTTTAGTAAT 2277343 Query 171940 CCATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAATTAATGAATATAATCC 171999 ||| |||||||||| ||| ||||| ||| || ||| ||||||||| ||||||| || Sbjct 2277342 CCACTTTTTAAATAATTTTACTTCTTCTTTATTTGATCTTAAAATTAAGGAATATAGACC 2277283 Query 172000 AGATTCTGATATATAAATAGTAtttttttCATTATATGTTA 172040 ||| |||| || || | | | |||| | | |||| ||| Sbjct 2277282 TGAT--TGATTAATGAAAATTGTGTTTTCCTTAATATTTTA 2277244 >seq255 Length=1588157 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171880 TTCtttttttATTTTATATTCACCATGTTTTCTAATATTTGGTAAAACTTCATTAGTTAT 171939 ||| ||| || ||||||||| |||| |||||||||| ||||||||||| ||||| || Sbjct 576124 TTCGTTTCGTAATTTATATTCGCCATATTTTCTAATAGAGGGTAAAACTTCTTTAGTAAT 576183 Query 171940 CCATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAATTAATGAATATAATCC 171999 ||| |||||||||| ||| |||||| ||| || ||| ||||||||| |||| || || Sbjct 576184 CCACTTTTTAAATAATTTTGCTTCTTCTTTATTTGATCTTAAAATTAAGGAATGTAGACC 576243 Query 172000 AGATTCTGATATATAAATAGTAtttttttCATTAT 172034 ||||| || |||| || |||| || | ||| Sbjct 576244 TGATTCATTAATGAAAATTGTGTTTTCTTTAATAT 576278 >seq1141 Length=401473 Score = 111 bits (122), Expect = 2e-19 Identities = 118/155 (76%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 171880 TTCtttttttATTTTATATTCACCATGTTTTCTAATATTTGGTAAAACTTCATTAGTTAT 171939 ||| ||| || ||||||||| |||| |||||||||| ||||||||||| ||||| || Sbjct 31770 TTCGTTTCGTAATTTATATTCGCCATATTTTCTAATAGAGGGTAAAACTTCTTTAGTAAT 31829 Query 171940 CCATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAATTAATGAATATAATCC 171999 ||| |||||||||| ||| |||| ||| || ||| ||||||||| ||||||| || Sbjct 31830 CCACTTTTTAAATAATTTTGCTT---TTTTATTTGATCTTAAAATTAAGGAATATAGACC 31886 Query 172000 AGATTCTGATATATAAATAGTAtttttttCATTAT 172034 ||||| || |||| || |||| || | ||| Sbjct 31887 TGATTCATTAATGAAAATTGTGTTTTCTTTAATAT 31921 >seq1884 Length=189235 Score = 104 bits (114), Expect = 4e-17 Identities = 119/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 171869 AATGTTTCTAATTCtttttttATTTTATATTCACCATGTTTTCTAATATTTGGTAAAACT 171928 ||| ||| |||| ||||| | ||| || ||| | |||| ||||| || ||||| Sbjct 32292 AATATTTAAAATT-TTTTTCAAGTTTGTACTCAGAAAATTTTATAATAGGGGGCAAAACA 32350 Query 171929 TCATTAGTTATCCATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAATTAAT 171988 || || | | ||| |||||||| | ||| ||||||||||| |||||| || |||||| Sbjct 32351 TCTTTCATAACCCACTTTTTAAACAATTTCGCTTCTGATTTATTAGATCTCAATATTAAT 32410 Query 171989 GAATATAATCCAGATTCTGATATATAAATAGTAtttttt 172027 ||||||||||||||||| ||| ||| ||||| |||| Sbjct 32411 GAATATAATCCAGATTCATTGATAAAAACAGTATCTTTT 32449 >seq2032 Length=203361 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/155 (75%), Gaps = 5/155 (3%) Strand=Plus/Minus Query 171868 TAATGTTTCTAATTCtttttt-tATTTTATATTCACCATGTTTTCTAATATTTGGTAAAA 171926 |||| ||| ||||||| |||| || | ||||||| | | ||| | |||| ||||||||| Sbjct 131752 TAATATTT-TAATTCTATTTTGTAGTATATATTCTCTACATTTACGAATACTTGGTAAAA 131694 Query 171927 CTTCATTAGTTATCCA-TTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAATT 171985 |||| ||||| ||||| ||||||| || || || ||| ||| |||||| |||||| Sbjct 131693 CTTCTTTAGTAATCCACTTTTTTAGGTAACTTTGCCTCTTTTTTATTAGATCTCAAAATT 131634 Query 171986 AATGAATATAATCCAGATTCTGATATATAAATAGT 172020 | |||||||| | ||||| || ||||| ||| Sbjct 131633 AGAGAATATAAAGCGGATTC--ATTAATAAAAAGT 131601 >seq1481 Length=432034 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || ||||| ||||| || || | ||| | || | | Sbjct 233954 ATGCAGATTTTTGTAAAGACGCTCACAGGAAAAACGATTACGTTGGAGGTAGAGCCCTCT 233895 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || ||| |||||||| || ||||| || || |||||||| Sbjct 233894 GACACGATCGAGAATGTTAAGGCGAAGATTCAAGACAAGGAAGGGATTCCTCCTGATCAG 233835 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || || || ||||| ||| | ||||| || || || ||| Sbjct 233834 CAGCGCCTGATCTTTGCCGGGAAGCAGTTAGAAGATGGCCGAACGTTGTCGGACTACAAT 233775 Query 124719 ATTCAAAAAG 124728 |||||||||| Sbjct 233774 ATTCAAAAAG 233765 >seq110 Length=3047469 Score = 89.7 bits (98), Expect = 8e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171880 TTCtttttttATTTTATATTCACCATGTTTTCTAATATTTGGTAAAACTTCATTAGTTAT 171939 ||| ||||| | ||| || ||||||| ||||||||| ||||||||||| || || | Sbjct 2024750 TTCGTTTTTGAGTTTGTACTCACCATATTTTCTAATGGAGGGTAAAACTTCTTTCGTAAC 2024809 Query 171940 CCATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAATTAATGAATATAATCC 171999 ||| |||| ||| ||||| || ||| || |||||| | |||| |||||||| || Sbjct 2024810 CCACTTTTGAAAGATTTTTGCCTCTATCTTATTAGATCTCATGATTAGAGAATATAAACC 2024869 Query 172000 AGATTCTGATATATAAATAGTAttttttt 172028 |||||| | ||| ||| ||||||| Sbjct 2024870 AGATTCATTAACGAAAACAGTGTTTTTTT 2024898 >seq1415 Length=175792 Score = 86.0 bits (94), Expect = 9e-12 Identities = 112/153 (73%), Gaps = 8/153 (5%) Strand=Plus/Minus Query 171881 TCttttttt--ATTTTATATTCACCATGTTTTCTAATATTTGGTAAAACTTCATTAGTTA 171938 |||| |||| | ||| || |||||| ||||||||||| || |||||||| || || | Sbjct 96086 TCTTGTTTTCAAGTTTGTACTCACCAAGTTTTCTAATAGAGGGCAAAACTTCTTTCGTAA 96027 Query 171939 TCCATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGAT---AAAATTAATGAATATA 171995 ||| |||| || ||||| || || ||||||| | || ||| |||| ||||| | Sbjct 96026 CCCAAGTTTTGAAGATTTTTGCCTC---TTTTTTATGTAATCTCAAATTTAAAGAATAAA 95970 Query 171996 ATCCAGATTCTGATATATAAATAGTAttttttt 172028 ||| ||||| || ||||||||||||||| Sbjct 95969 GTCCTGATTCATTGATGGAAATAGTATTTTTTT 95937 >seq727 Length=1466632 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 171941 CATTTTTTAAATATTTTAGCTTCTGATTTTTTAGATGATAAAATTAATGAATATAATCCA 172000 || |||||||||| ||| |||||| |||| |||||| | |||||| |||||||||||| Sbjct 1313337 CAATTTTTAAATAATTTTGCTTCTTATTTGTTAGATTTAAGAATTAAAGAATATAATCCA 1313396 Query 172001 GATTCTGATATATAAATAGTAtttttttCATTAT 172034 ||||| ||| ||||||| |||| || | ||| Sbjct 1313397 GATTCATTAATAAAAATAGTGTTTTATTTAATAT 1313430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754876470816000