Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq63 96.9 6e-15 seq2082 87.8 3e-12 seq1654 87.8 3e-12 >seq63 Length=2369799 Score = 96.9 bits (106), Expect = 6e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 189435 AAACTCATGATCCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGC 189494 |||| || || ||| |||||| || | || || ||| |||| | ||||| ||||||| Sbjct 1387648 AAACACACGACGATCTGTGGAACTCGGCTCAGATACAGCTGGTCCGGGAAGGTAAAATGC 1387589 Query 189495 ATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGAAG 189554 || | || || |||||||| ||||| ||||||||||| || ||||| | ||||||| Sbjct 1387588 ATGGATTCTTGCGAATGTACTGGGCCAAGAAGATACTGGAGTGGACAGCTTCGCCTGAAG 1387529 Query 189555 ACGCTTTGAGTTATAG-TATCTATTTGAACAACAAGTACGAACTAGACGGCACGGATCCT 189613 | ||||| || | || ||| || | || ||| || | ||||||| |||||| Sbjct 1387528 AGGCTTT-AGCTTCAGCTATTTACCTCAATGACAGATATAGCATGGACGGCAGAGATCCT 1387470 Query 189614 AACGGATACGTAGGT 189628 | ||| ||||| ||| Sbjct 1387469 AGCGGTTACGTTGGT 1387455 >seq2082 Length=177026 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 42552 TTGATCCGAA--GTTAAATAATAAAACGCCCACGTTTCCTCTATAGTCTGAGTCAATTAC 42609 ||||| ||| |||||||| || ||| || || || ||| ||||||| ||||| ||| Sbjct 158318 TTGATTTGAATGGTTAAATAGTACAACACCTACATTCCCTGTATAGTCCCTGTCAACTAC 158259 Query 42610 GCCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCCGATCTAGGAGCTATTCTACC 42669 || || || || || || |||| || ||| | | |||||||| ||||||||||| Sbjct 158258 ACCTGCTCCAACATCAATGAAATGATGTAGAGCCAAAGCGGATCTAGGTGCTATTCTACC 158199 Query 42670 GTAGTATCCGTTAGGTATTTTTAGAATTATATCTGTTTTTATCAGTTCTTTATTCATAGG 42729 || | | ||||| ||| | ||||||||| || || | || | | | Sbjct 158198 ATAACAGTTTTCAGGTAGTTTAATTGCTATATCTGTCTTAATTAATTGTCTGCCAAATTT 158139 Query 42730 CTCTATTACATAATCATACGCGCTATATAAGTCATAACCCGC 42771 || || |||||||||||| || ||| |||| ||| |||| || Sbjct 158138 CTGTACTACATAATCATAGGCACTAAATAAATCAAAACCAGC 158097 >seq1654 Length=165633 Score = 87.8 bits (96), Expect = 3e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 61019 CTAATAGGTATACGTTAACAGGTTTCGAAACATCTTTATACGAGAACTTTCTAATAGATC 61078 |||| | ||| || ||||||| ||| |||||| || || || ||||| | | | | Sbjct 110315 CTAACATGTAAACAAGAACAGGTATCGTTTTATCTTTGTAAGAAAAGTTTCTTAAACACC 110256 Query 61079 TACCCAAAATCTGATTGTATTG-TGAAAAAGTATCAGGTATAGTCATAAACCAGATGTTT 61137 || | || || | ||||| ||| | | |||||| || |||| |||| | || | Sbjct 110255 TAGCGTTTATTTGCT-GTATTTCTGACATGGAATCAGGAATGGTCAAGTACCAAAGGTCT 110197 Query 61138 CTTACTTCCTTCAAAGTATATGATTCTGACATAATATTGGAGGAAAATAAAAACATAATC 61197 ||||| || ||||| ||||| |||||||| ||||| || || ||| | |||||||||| Sbjct 110196 CTTACCTCTTTCAAGGTATAAGATTCTGAAATAATTTTAGAACCAAAGAGAAACATAATC 110137 Query 61198 TTTTCTCCGTTATCATT 61214 | || || || ||||| Sbjct 110136 TCCTCCCCTTTTTCATT 110120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922488592654800