Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq269 109 6e-19 seq4873 105 8e-18 seq870 105 8e-18 seq910 104 3e-17 seq464 104 3e-17 seq312 104 3e-17 seq163 104 3e-17 seq188 100 3e-16 seq8807 96.9 4e-15 seq154 93.3 5e-14 seq1475 89.7 6e-13 seq5278 87.8 2e-12 >seq269 Length=2107088 Score = 109 bits (120), Expect = 6e-19 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1943516 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1943457 Query 60126 TACTACCGAGGA-TTGAATATA 60146 |||||||||||| ||||| ||| Sbjct 1943456 TACTACCGAGGACTTGAAGATA 1943435 Score = 105 bits (116), Expect = 8e-18 Identities = 71/78 (91%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1942582 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1942523 Query 60126 TACTACCGAGGA-TTGAA 60142 |||||||||||| ||||| Sbjct 1942522 TACTACCGAGGACTTGAA 1942505 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 180966 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 181025 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 181026 TACTACCGAGGA 181037 >seq4873 Length=39495 Score = 105 bits (116), Expect = 8e-18 Identities = 71/78 (91%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 38820 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 38761 Query 60126 TACTACCGAGGA-TTGAA 60142 |||||||||||| ||||| Sbjct 38760 TACTACCGAGGACTTGAA 38743 >seq870 Length=576414 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 258084 AAAAGTTACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 258143 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 258144 TGACCACTATACTACCGAGGA 258164 >seq910 Length=926833 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 190132 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 190073 Query 60126 TACTACCGAGGA-TTGA 60141 |||||||||||| |||| Sbjct 190072 TACTACCGAGGACTTGA 190056 >seq464 Length=805149 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 14922 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 14981 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 14982 TACTACCGAGGA 14993 >seq312 Length=1381084 Score = 104 bits (114), Expect = 3e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| | | ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 689537 AAAAATATACCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 689596 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 689597 CTGACCACTATACTACCGAGGA 689618 >seq163 Length=2096164 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 260461 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 260520 Query 60126 TACTACCGAGGATTGAATAT 60145 |||||||||||| | |||| Sbjct 260521 TACTACCGAGGACTACATAT 260540 >seq188 Length=1639871 Score = 100 bits (110), Expect = 3e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 60057 AAAAATTTT-CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||||| | ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 35859 AAAAATTGTACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 35800 Query 60116 CTCACCACTATACTACCGAGGATTGAATAT 60145 || |||||||||||||||| || | | ||| Sbjct 35799 CTGACCACTATACTACCGAAGACTTACTAT 35770 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 35079 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 35020 Query 60131 CCGAGGATTGAATATATA 60148 |||| || | ||| ||| Sbjct 35019 CCGAAGACTCTATAAATA 35002 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | | ||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 96133 AAAAGTGTACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 96192 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 96193 TGACCACTATACTACCGAAGA 96213 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 42155 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 42096 Query 60131 CCGAGGATTGAATAT 60145 |||| || | | ||| Sbjct 42095 CCGAAGACTTACTAT 42081 Score = 95.1 bits (104), Expect = 1e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 89113 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 89172 Query 60131 CCGAGGA 60137 |||| || Sbjct 89173 CCGAAGA 89179 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTT-CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||| | ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 95615 AAAAATAGTACTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 95674 Query 60116 CTCACCACTATACTACCGAGGA 60137 || |||||||||||||||| || Sbjct 95675 CTGACCACTATACTACCGAAGA 95696 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | |||| |||| |||||||||||| ||||| |||||||||||||| |||| Sbjct 146399 AAAAGTGATCTCTCCGGCGGGGAATCGAACCTCAGTCTCACGCGTGACAGGCGGGGATAC 146458 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 146459 TGACCACTATACTACCGAAGA 146479 >seq8807 Length=11549 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 11206 AAAAGTAATCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 11265 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||||| || Sbjct 11266 TGACCACTATACTACCGAAGA 11286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 8592 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 8533 Query 60131 CCGAGGA 60137 |||| || Sbjct 8532 CCGAAGA 8526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| Sbjct 9229 CGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTA 9170 Query 60131 CCGAGGATTGAATAT 60145 |||| || | | ||| Sbjct 9169 CCGAAGACTTACTAT 9155 >seq154 Length=1683969 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| || |||| ||||| || | ||| ||| || || || ||||| |||| | Sbjct 580023 CCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 579964 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || || |||||||||||||| ||||||||||||||||| | || Sbjct 579963 AGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 579904 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| | | ||| |||| | |||| || | | || || | || || Sbjct 579903 ATTCCTTCCTTAT-CTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAAC 579845 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || | ||||| || || || ||||| Sbjct 579844 TTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||| ||||| || | || |||||| || |||||||| || | Sbjct 578830 CCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAG 578771 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||||||||| ||||||||||||||||| | || Sbjct 578770 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGA 578711 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | || || || |||||| ||| | || | | || || | || || Sbjct 578710 ATTCCTTCTTTATCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACT 578651 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || ||||| ||||| || || || ||||| Sbjct 578650 TCCAATGTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||| ||||| || | ||| ||| || || || ||||| |||| | Sbjct 579058 CCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 578999 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| |||||||| ||||||||||||||||| | || Sbjct 578998 AGAGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 578939 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||| || ||| || || | || | | || || | || || Sbjct 578938 ATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACT 578879 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || || || || ||||| ||||| Sbjct 578878 TCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 >seq1475 Length=480095 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| |||| ||||| ||| | || |||| ||| ||||| || || Sbjct 62652 CCTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAA 62711 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || |||||||||||||| | || | | |||||| ||| || ||| |||| | Sbjct 62712 ATCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTT 62771 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| | || || || | || |||||||| ||||| || || || ||| Sbjct 62772 TCAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACA 62831 Query 43173 AAGATTTGCATTTT 43186 || |||||||| || Sbjct 62832 AAAATTTGCATGTT 62845 >seq5278 Length=33857 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 60077 GGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGG 60136 |||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||| | Sbjct 7845 GGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAAG 7904 Query 60137 A 60137 | Sbjct 7905 A 7905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571378944423600