Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5151 120 5e-22 seq777 102 1e-16 seq1650 100 4e-16 seq59 93.3 6e-14 seq5635 89.7 8e-13 seq1481 87.8 3e-12 seq316 84.2 3e-11 >seq5151 Length=62192 Score = 120 bits (132), Expect = 5e-22 Identities = 198/286 (69%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 10342 CTGCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAAT 10401 || ||||| | || | |||||||| ||||||||||| ||| || || |||| || Sbjct 31848 CTCCAGGATTCGACCTGAAAAGTGCTTATGATTATATAGTTCCAAAGTTTGGTAAAGAAC 31789 Query 10402 TAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCA 10461 |||| ||||| || ||| | || | |||||| || |||| || ||||||||| Sbjct 31788 TAATCAAAACGGACTTAGCACTTCAACTACCTAAAAATTGCTATGGTAGGATAGCTCCCA 31729 Query 10462 GATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATT 10521 | || ||| || || || | ||||| ||| |||||| || ||| ||||| ||| Sbjct 31728 GGTCGAGTTTGGCACTTCATCATTTTATCGATGTTGGAGTCGGTGTAGTTGACAGGGATC 31669 Query 10522 ATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATA 10581 | ||||||||| | || | ||||| |||||||| ||||||||| || ||||| | Sbjct 31668 TCACAGGAAATGTACGTGTTCTCTTATTCAATCATTCAAATGAAGATGTTTGTATAAAGA 31609 Query 10582 GAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCC 10627 ||| ||||| || | || | || || || ||| ||| |||| Sbjct 31608 AAGGGGATAGGGTAGCACAGATTATTTGGGAGGTAATATTACATCC 31563 >seq777 Length=1145621 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 10473 GCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAAT 10532 |||||| || | || |||||| ||||||| || ||| ||||| || |||| || ||| Sbjct 1106235 GCTCTACATCATTTCATTGATGTTGGAGCAGGTGTAGTTGACAGGGACTATACGGGGAAT 1106294 Query 10533 GTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGA 10592 || || || || ||||||||||||| ||| |||| ||| | || || | || ||| || Sbjct 1106295 GTAGGTGTTGTACTATTTAATCATTCAAATCAAGACTTTGTTATTAAAAAAGAAGACAGG 1106354 Query 10593 ATATCTCAATTAATATGTGAAAAAATTTTATATCCT 10628 ||| | ||| |||| |||||| ||| | |||||| Sbjct 1106355 ATAGCACAACTAATTTGTGAATTAATACTGTATCCT 1106390 >seq1650 Length=162696 Score = 100 bits (110), Expect = 4e-16 Identities = 180/262 (69%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 10342 CTGCAGGAATGGATTTAAAAAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAAT 10401 ||||| | | ||||| | ||| ||||| |||||| | || || || | | | | | | Sbjct 93848 CTGCAAGTTTTGATTTGAGAAGCGCATACGATTATGTAGTACCAAAACTTAACAGACAGT 93907 Query 10402 TAATAAAAACTGATTT---AATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTC 10458 || | || || || | ||||| || | ||| | ||||||| ||| |||||| Sbjct 93908 TACTTAAGACAGACATTGCAATTA---AATTACCTGATCATTGTTATGGTAGAATAGCTC 93964 Query 10459 CCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAG 10518 | | |||| | |||| |||| || |||||||||||||| || |||||||| || Sbjct 93965 CTACGTCTGGTCTAGCGTATCATAATTTCATTGATATTGGAGCAGGTGTAATTGATAGAG 94024 Query 10519 ATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAA 10578 |||| |||||||| | || || | || | |||||||| | |||| ||| | || | Sbjct 94025 ATTAATCGGGAAATGTATGTGTTTTACTTTTCATTCATTCTACTTAAGACTTTGTTATTA 94084 Query 10579 ATAGAGGAGATAGAATATCTCA 10600 | ||||||||||||| |||| Sbjct 94085 CAACAGGAGATAGAATAGCTCA 94106 >seq59 Length=4169348 Score = 93.3 bits (102), Expect = 6e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 10437 GGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATT 10496 || || |||| | | |||| |||||||| | ||| | |||| | ||| | | Sbjct 38358 GGTTGCTATGGACGGATAGCGCCCAGATCAGGGTTATCATTAAAATATGGGATTCACGTA 38417 Query 10497 GGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCAT 10556 ||||| ||||| ||||| ||||||||||||||||| | || ||| |||| |||||| Sbjct 38418 GGAGCCGGAGTTATTGATAAAGATTATAGAGGAAATATTGGTGTATTATTGTTTAATTTA 38477 Query 10557 TCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAA 10616 || | | || |||| | |||||| || || ||||| | ||| ||||||||||| Sbjct 38478 TCGAGTACCGAGTTTAAAGTAAATATTGGGGACAGAATTGCACAAATAATATGTGAACGC 38537 Query 10617 ATTTTATATCC 10627 || || ||||| Sbjct 38538 ATATTCTATCC 38548 >seq5635 Length=50823 Score = 89.7 bits (98), Expect = 8e-13 Identities = 184/276 (67%), Gaps = 17/276 (6%) Strand=Plus/Minus Query 10361 AAGTGCATATGATTATATTGTTTCAGCACATGATAAAAAATTAATAAAAACTGATTTAAT 10420 |||||| ||||||||||| ||| || || |||| || |||| ||||| || || Sbjct 17836 AAGTGCTTATGATTATATAGTTCCAAAGTTTGGTAAAGAACTAATCAAAACGGACTTGGC 17777 Query 10421 TATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAA 10480 | || | |||||| | | || |||||||||| || | ||| || || | Sbjct 17776 ACTTCAACTACCTAAATGGT--------AGGATAGCTCCCAGGTCGGGTTTGGCACTTCA 17725 Query 10481 TAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGT 10540 | | || || ||| ||||||| || ||| ||||| |||| | ||||||||| | || Sbjct 17724 TTATTTCATAGATGTTGGAGCCGGTGTAGTTGACAGGGATTTCACAGGAAATGTATGTGT 17665 Query 10541 AATA---------TTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAG 10591 | ||||| |||||||| |||||||||||| |||| | ||| ||||| Sbjct 17664 TCTTATTCTTCTCTTATTCAATCATTCAAATGAAGATTTTTGTGTAAAGAAAGGGGATAG 17605 Query 10592 AATATCTCAATTAATATGTGAAAAAATTTTATATCC 10627 || | || | || ||||| ||| |||||||| Sbjct 17604 GGTAGCACAGATTATTTGTGAGGTAATATTATATCC 17569 >seq1481 Length=432034 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/100 (80%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 146088 CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAA 146147 |||| || || || ||||| ||||| || | | ||| || || |||||||| ||||||| Sbjct 222134 CTTTTGA-ATGTTGTAATCAGAAAGTGTGCGACCATCTTCCAACTGTTTTCCTGCAAAAA 222192 Query 146148 TCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||||| ||||| || || || ||||||||||| ||||| Sbjct 222193 TCAATCTCTGCTGGTCTGGGGGGATTCCTTCTTTGTCTTG 222232 >seq316 Length=1680448 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 10399 AATTAATAAAAACTGATTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTC 10458 |||||| ||| ||| | || | ||| | || | || ||||||| | | ||| | Sbjct 1398332 AATTAAAAAACACTAACATAGCTGTAGTGTTACCAGATGGTTGTTATGGACGGATAGTGC 1398273 Query 10459 CCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAG 10518 ||||||| | ||| |||| | ||| | | |||||||| || ||||| ||| Sbjct 1398272 CCAGATCAGGGTTATTATTAAAATATGGGATTCACGTAGGAGCTGGTGTTATTGATAAAG 1398213 Query 10519 ATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAA 10578 ||||| |||| ||| | || ||| |||| |||||| || | | || |||| | ||| Sbjct 1398212 ATTATTGAGGCAATATTGGTGTATTATTGTTTAATTTATCGAGTACCGAGTTTAAAGTAA 1398153 Query 10579 ATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAATG 10634 ||| || || ||||| | ||| ||||||||||| || || |||||| || || Sbjct 1398152 ATATTGGGGACAGAATTGCACAACTAATATGTGAACGCATATTCTATCCTGAATTG 1398097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742956022310400