Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq254 116 3e-21 seq907 102 7e-17 seq1475 95.1 1e-14 seq154 93.3 4e-14 seq1481 89.7 5e-13 >seq254 Length=3229631 Score = 116 bits (128), Expect = 3e-21 Identities = 162/226 (72%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG---AAGGCAGAGTGGTCAATC 57935 ||||||||||| ||||||||||||||| | |||| || || || ||| || | Sbjct 2115974 CTGTTCAACGCCATCGAAACAATGCCC---TGTGTCAAGCGCAAAGCTGATTGGGCATTG 2115918 Query 57936 AAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTC 57995 | ||||| |||| || || ||||| | ||| | | | |||||||| || ||| Sbjct 2115917 CAGTGGATCGCCAGCGAGACCGCAACGTTTGGTGAGCGTATTGTAGCGTTCGCTGCAGTC 2115858 Query 57996 GAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTG 58055 || ||||| ||||| || || ||||| || | || || ||| | ||||| || ||||| Sbjct 2115857 GAGGGTATCTTCTTCTCCGGTAGCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTC 2115798 Query 58056 ATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||||||| || || || ||||| || |||| || || ||||||| Sbjct 2115797 ATGCCCGGACTAACCTTCAGCAATGAACTGATCTCACGTGACGAGG 2115752 >seq907 Length=523837 Score = 102 bits (112), Expect = 7e-17 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 23312 GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATC 23371 |||||||| |||||||| | ||| || || ||| |||| || || || || ||| Sbjct 391445 GGACACATAAGACTCCAGACATCGTCTGCCTCCACCCGTTTCATGAACAGGTCTGGGATC 391386 Query 23372 CATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA 23431 |||||||| |||||| || || || ||||||||||| || |||||||| ||| Sbjct 391385 CATAGAGCAAAGAACATGTCTCGTGCTCGCACCTCCTCAGCACCCGTGTTCTTGCGCAAT 391326 Query 23432 TCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGT 23491 | | ||| || ||||| || | ||||| ||||| | ||| | |||||||| || ||| Sbjct 391325 GCAATAAACTCAAACACATCTGAGTGCCATGGCTCCAAGTAGATCGCAAACGCTCCTGGT 391266 Query 23492 CTCT 23495 |||| Sbjct 391265 CTCT 391262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || || |||||||| || | || || ||| || ||||| ||| | || ||||| Sbjct 405415 ACCTGGAACTCGCCTGAGAGCACTCGTCGTGAATAGATGTTACTAGTGTAAGGCTCGAAG 405356 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 || || || || || || ||||| ||||| || || || ||||| || |||| | | | Sbjct 405355 GACTCGTTATTGCCAAGAATCTGTGCGGTAGATGCAGTGGGCATGGGAGCCAGTAACAAC 405296 Query 22580 GAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCG 22639 ||||||| | || ||||||| || ||| |||||| | |||||||||||| ||| Sbjct 405295 GAGTTTCGTACACCATGCTTTGCGATCTTAGCCTTGAGAGCAGCCCAGTCCCACAGGTCG 405236 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCA 22673 | || ||||| ||||||| || || |||| Sbjct 405235 GTGGGTGTCAC---TCCCCACATGTCATACTGCA 405205 >seq1475 Length=480095 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||||||||| || || || || || || ||||| || ||| | || || || || Sbjct 62845 AACATGCAAATTTTTGTGAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTCGAGCCA 62786 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | | |||| ||||| || ||| || ||| ||||| || | || || || Sbjct 62785 TCAGACACTATTGAAAATGTCAAGGCAAAGA-TACAGGATAAGGAGGGAATCCCCCCAGA 62727 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| || || || || || |||||||| ||||| Sbjct 62726 CCAGCAGCGACTGATTTTTGCCGGTAAACAGTTAGAAGA 62688 >seq154 Length=1683969 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || ||||| ||||| |||||| | || ||||| || ||| Sbjct 579569 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCC 579628 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | || || |||||||| | || || |||||| Sbjct 579629 GATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 579688 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || |||||||| |||||| ||||||| || | || || ||| Sbjct 579689 CAGCGACTCATCTTCGCTGGTAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 579748 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || || |||| || ||||| | || |||| Sbjct 579749 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTGCGACTGCGAGGAGGTA 579797 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || ||||| ||||| |||||| | || ||||| || || Sbjct 578832 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCT 578891 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | || || |||||||| | || || |||||| Sbjct 578892 GATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 578951 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || |||||||| || ||| ||||||| ||| || || || ||| Sbjct 578952 CAGCGACTCATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACTCTGTCTGACTACAAC 579011 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || || |||| || |||| | || |||| Sbjct 579012 ATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCGACTTCGAGGAGGTA 579060 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || ||||| || || ||||| | || ||||| || || Sbjct 578604 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCT 578663 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || ||| | ||| || || ||||| | || || |||||| Sbjct 578664 GATACCATCGAGAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGACCAG 578723 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| || || |||||||| || ||| ||||||| Sbjct 578724 CAGCGACTCATCTTCGCTGGTAAGCAGCTGGAAGA 578758 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| || ||||| ||||| | || ||||| || || Sbjct 579797 ATGCAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCT 579856 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | ||| || |||||||| | || || |||||| Sbjct 579857 GATACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCAG 579916 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || |||||||| || || ||||||| || || || || ||| Sbjct 579917 CAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAAC 579976 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || ||||| || || || || |||| || |||| | || |||| Sbjct 579977 ATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCGACTACGAGGAGGTA 580025 >seq1481 Length=432034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| ||||| |||||||| || ||||| |||||||| || | || || || || Sbjct 233958 AAACATGCAGATTTTTGTAAAGACGCTCACAGGAAAAACGATTACGTTGGAGGTAGAGCC 233899 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || || || ||||||||||| | || || || Sbjct 233898 CTCTGACACGATCGAGAATGTTAAGGCGAAGATTCAAGACAAGGAAGGGATTCCTCCTGA 233839 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || || || || || ||||| ||||| Sbjct 233838 TCAGCAGCGCCTGATCTTTGCCGGGAAGCAGTTAGAAGA 233800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445424441450400