Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq41448 95.1 4e-15 >seq41448 Length=1254 Score = 95.1 bits (104), Expect = 4e-15 Identities = 243/357 (68%), Gaps = 20/357 (6%) Strand=Plus/Minus Query 33561 TCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCC 33620 ||||||| || |||||||||||||||||| ||||| || | | || |||| Sbjct 1106 TCGGCCATGGCGTTGTCGTAGCTGTCGCCCTTCGATCCGACAGACGCCACGGCCTCGGCT 1047 Query 33621 TCAGCCAGCCGTTCGCTGTAGCGAAT-GCT-GACGTATTGAGACCCCCTGTCGGAATGAT 33678 || || ||||| ||| |||||||||| ||| || || ||| ||||| ||| |||| Sbjct 1046 TCGGCGAGCCGCTCGGTGTAGCGAATCGCTCGA--TACTGAACGCCCCTATCGCTGTGAT 989 Query 33679 GAATCA---AAGTCCCGTCCT---CGCCCGGTTGGCGGGCGTACA-GCGCTTGTTCAAGT 33731 | | || || |||||| || || | || || || ||| || | || || || Sbjct 988 GGACCAGGCCGGTGACGTCCTGCCCGGCCCGCTGACGTGCCCACAGGCCCATG-TCGAGG 930 Query 33732 GCATCCAGAACAAAGTCCGTGGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGG 33791 ||||| || | | ||| ||| || ||||| | ||| ||||||| || || ||| Sbjct 929 GCATCGAGCGCCAGGTCGGTGCGCAACGACGTGGACACCTGCCAGCCCACGATCATCCGG 870 Query 33792 GCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGT---CGAGACATAC 33848 ||| ||||| | ||||| |||||||| ||| || | | ||| || ||| || Sbjct 869 CTGAAGACGTCCAGGACGAACGCCACGTAGGTCCACCC--GGCGTGTGTGCG-GACGTAG 813 Query 33849 GTAAAATCCGACACCCAGAGCTGATTCGG-TCGGTCAGCCTTGAACTGCCGGTTGAC 33904 || | ||| | |||||| ||||| ||||| | || || |||||| ||||||||| Sbjct 812 GTCAGATCGGCCACCCACAGCTGGTTCGGCGCAGT-GGCGATGAACTTCCGGTTGAC 757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170547619579900