Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq254 111 2e-19 seq59 111 2e-19 seq316 91.5 2e-13 seq3242 84.2 3e-11 >seq254 Length=3229631 Score = 111 bits (122), Expect = 2e-19 Identities = 148/203 (73%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || ||||||||||| ||||||||||| || ||||| || ||||||||||| ||| Sbjct 2115781 AAGGTTAGTCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGCTACCG 2115840 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGG- 33747 || |||||||| || || |||||||| || || | || | ||| ||| ||| ||| Sbjct 2115841 GAGAAGAAGATACCCTCGACTGCAGCGAACGCTACAATACGCTCACCA-AACGTTGCGGT 2115899 Query 33748 --CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33805 ||||| | ||||||| |||||||| || || || ||||| ||||| || Sbjct 2115900 CTCGCTGGC---GATCCACTGCAATGCCCAATCAGCTTTGCGCTTGACACAGGGCATTGT 2115956 Query 33806 TTCTATGGCATTAAAGAGATAGT 33828 ||| ||||| || || ||| ||| Sbjct 2115957 TTCGATGGCGTTGAACAGAAAGT 2115979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 ||||| | |||||| || || ||||||| || || ||||||||||| || ||||| ||| Sbjct 2122675 TTAGAGAGATCCACCTCCTCAGCTGTCCAGAACGAGGCCTCTGCCTTCTTGTACATTTTC 2122734 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 34165 |||||||||||||||| || ||||| | || ||||| Sbjct 2122735 CAGATGTCATGATATTCAATAGGGAACACCACGAATCT 2122772 >seq59 Length=4169348 Score = 111 bits (122), Expect = 2e-19 Identities = 187/266 (70%), Gaps = 15/266 (6%) Strand=Plus/Minus Query 31297 AGTCCTGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCTA-----GAGATTGT- 31350 ||||||||||| ||||| |||| | |||||||| | || | || || ||||| Sbjct 38623 AGTCCTGTTGAGCCAAATCCTTTAGCTCCTCTAACCGTGCAATTTAATTTGTCAATTGTA 38564 Query 31351 ACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCA 31410 | ||| |||| ||| ||||| |||| |||| | | |||| || || ||||| || ||| Sbjct 38563 ATTTCCTCAACTTCGGGATAGAATATGCGTTCACATATTATTTGTGCAATTCTGTCCCCA 38504 Query 31411 GTATTTACATTAAAC---GTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCC 31467 ||||||| |||||| |||| | |||| || || ||| || || || ||||| Sbjct 38503 ATATTTACTTTAAACTCGGTACTCGATAAATTA--AACAATAAT-ACACCAATATTTCCT 38447 Query 31468 CTATAATCTTCGTCTATTACACCGCCTCCTATATCAATGCC---TTTTAGGGACAGACCA 31524 |||||||||| || || || ||| |||||| | ||| || ||||| || | || Sbjct 38446 CTATAATCTTTATCAATAACTCCGGCTCCTACGTGAATCCCATATTTTAATGATAACCCT 38387 Query 31525 GACCTAGGAGCTATTCTACCATAGCA 31550 || || || ||||| | |||||||| Sbjct 38386 GATCTGGGCGCTATCCGTCCATAGCA 38361 >seq316 Length=1680448 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/211 (71%), Gaps = 13/211 (6%) Strand=Plus/Plus Query 31297 AGTCCTGTTGATCCAAACCCTTGATCTCCTCTATCTGTAC-----TATCTAGAGATTGT- 31350 ||||||||||||||||| |||| |||||||| |||| | || | ||||| Sbjct 1398030 AGTCCTGTTGATCCAAATCCTTTCGCTCCTCTAACTGTGCATTTTAATTTGTCAATTGTA 1398089 Query 31351 ACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCA 31410 | ||| |||| ||| ||||| |||| |||| | | ||||| || || ||||| || ||| Sbjct 1398090 ATTTCCTCAA-TTCAGGATAGAATATGCGTTCACATATTAGTTGTGCAATTCTGTCCCCA 1398148 Query 31411 GTATTTACATTAAAC---GTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCC 31467 ||||||| |||||| |||| | |||| || || ||| || || || || || Sbjct 1398149 ATATTTACTTTAAACTCGGTACTCGATAAATTA--AACAATAAT-ACACCAATATTGCCT 1398205 Query 31468 CTATAATCTTCGTCTATTACACCGCCTCCTA 31498 | |||||||| || || ||||| |||||| Sbjct 1398206 CAATAATCTTTATCAATAACACCAGCTCCTA 1398236 >seq3242 Length=134958 Score = 84.2 bits (92), Expect = 3e-11 Identities = 183/269 (68%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 31387 ATTAGCTGAGCTATTCTATCTCCAGTATTTACATTAAACG-TACATTTTCCATTATTAAT 31445 || |||||||||||| ||||||| | || | | ||| | || | || ||| | Sbjct 86585 ATAAGCTGAGCTATTATATCTCCTCTTTTAATAACAAAGTCTTCAGTAGA-ATGATTGAA 86643 Query 31446 AAGAATGACTCCTATGTTTCCCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT 31505 ||| | || | || |||||| | ||||| || |||||||| |||| | |||||| Sbjct 86644 AAGTAAAACACGTACATTTCCCGTGGAATCTCTATCGATTACACCTGCTCCGACATCAAT 86703 Query 31506 GCCTTTTAGGGAC---AGACCAGACCTAGGAGCTATTCTACCATAGCAGAACTTAGGCAT 31562 | || | || ||||||||||||||||||||||||||||| || | ||| | Sbjct 86704 GAAATTATGATACGCTAGACCAGACCTAGGAGCTATTCTACCATAACACTGATCAGGTAA 86763 Query 31563 GGACATACTAATATCTGTCTTAATTAACTGTCGTTCTCCAGGAGGGATAGT--ATAATCG 31620 | || ||| ||| |||||| |||||||| | | || | || | ||||||| Sbjct 86764 TGTAATTGCAATGTCTCTCTTAACTAACTGTC--TGTTAAGTTTTGGTACTACATAATCG 86821 Query 31621 TAAGCGCTATACAAATCATATCCGGCAGC 31649 || ||||| ||||||| | || ||||| Sbjct 86822 TATGCGCTTCTCAAATCAAAACCTGCAGC 86850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629334451173600