Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq59 95.1 1e-14 seq1654 89.7 5e-13 seq316 87.8 2e-12 >seq59 Length=4169348 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 8812 TTCAAATATTATTTGTGCTATCCTATCACCTACCTTTATGTTAAAATCACTACATCCATT 8871 |||| ||||||||||||| || || || || | |||| ||||| || ||| || || Sbjct 38534 TTCACATATTATTTGTGCAATTCTGTCCCCAATATTTACTTTAAACTCGGTAC-TCGATA 38476 Query 8872 ATTTATA-AACACGATACCTATTTCCCCTCTGTAATCACTATCAATAACGCCTCCTCCTA 8930 | ||| | || | | ||| || | ||||| ||||| |||||||||| || |||||| Sbjct 38475 AATTAAACAATAATACACCAATATTTCCTCTATAATCTTTATCAATAACTCCGGCTCCTA 38416 Query 8931 TATCTATATTATAATTTAACGATAATCCCGATCTAGGCGATATGCGTCCATAACATTTAT 8990 | || ||| ||||| ||||| || ||||| |||| ||| |||||||| || | Sbjct 38415 CGTGAATCCCATATTTTAATGATAACCCTGATCTGGGCGCTATCCGTCCATAGCAACCGT 38356 Query 8991 CTGGTATCA 8999 |||||| || Sbjct 38355 CTGGTAACA 38347 >seq1654 Length=165633 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/180 (73%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 77259 ATTATGTTCCTTTTCTCATCGAATATTATGTCAGAATCTTATACATTAAAAGAGGTACGA 77318 |||||||| || || || || ||||| |||||||||||||| || ||||||||| || Sbjct 110138 ATTATGTTTCTCTTTGGTTCTAAAATTATTTCAGAATCTTATACCTTGAAAGAGGTAAGA 110197 Query 77319 CATATTTGGTTTATGACTATTCCCGA-TACATTTTCTCAATACAATCAAATATTAGGCAG 77377 | |||||| |||| ||||| || | ||| | ||||| | |||||| | || Sbjct 110198 GACCTTTGGTACTTGACCATTCCTGATTCCATGTCAGAAATAC-AGCAAATAAACGCTAG 110256 Query 77378 ATCTATAAGAAAATTTTCTTATAATGATATACATGA-ACCTGTAAATGTATACTTGTTAG 77436 | | ||||||| |||||||| || |||| | | || |||||| ||| ||| |||||| Sbjct 110257 GTGTTTAAGAAACTTTTCTTACAAAGATA-AAACGATACCTGTTCTTGTTTACATGTTAG 110315 >seq316 Length=1680448 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 8812 TTCAAATATTATTTGTGCTATCCTATCACCTACCTTTATGTTAAAATCACTACATCCATT 8871 |||| |||||| |||||| || || || || | |||| ||||| || ||| || || Sbjct 1398118 TTCACATATTAGTTGTGCAATTCTGTCCCCAATATTTACTTTAAACTCGGTAC-TCGATA 1398176 Query 8872 ATTTATA-AACACGATACCTATTTCCCCTCTGTAATCACTATCAATAACGCCTCCTCCTA 8930 | ||| | || | | ||| || | |||| ||||| |||||||||| || |||||| Sbjct 1398177 AATTAAACAATAATACACCAATATTGCCTCAATAATCTTTATCAATAACACCAGCTCCTA 1398236 Query 8931 TATCTATATTATAATTTAACGATAATCCCGATCTAGGCGATATGCGTCCATAACATTTAT 8990 | || ||| ||||| |||| || ||||| ||| ||| ||||||||||| || Sbjct 1398237 CGTGAATCCCATATTTTAATAATAACCCTGATCTGGGCACTATCCGTCCATAACAACCAT 1398296 Query 8991 CTGGTATCATTA 9002 |||||| || || Sbjct 1398297 CTGGTAACACTA 1398308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468165382912800