Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq254 84.2 2e-11 >seq254 Length=3229631 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/209 (70%), Gaps = 10/209 (5%) Strand=Plus/Minus Query 52544 ACAATGTTCCGTGTGT---GCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACG 52600 |||||| || ||||| ||||||| | ||||||||||||| | ||||||| | || Sbjct 2115956 ACAATG--CCCTGTGTCAAGCGCAAA---GCTGATTGGGCATTGCAGTGGATCGCCAGCG 2115902 Query 52601 ACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGttttttt 52660 | | || || |||| || ||| | || ||||| ||| ||| || ||| | || || | Sbjct 2115901 AGACCGCAACGTTTGGTGAGCGTATTGTAGCGTTCGCTGCAGTCGAGGGTATCTTCTTCT 2115842 Query 52661 CGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACG 52719 | ||||| || || | || || | |||| || | | ||| | |||||||| || || Sbjct 2115841 CCGGTAGCTTCGCTTCCATCTTCTGGCTCAAGAAGCGT-GGCCTCATGCCCGGACTAACC 2115783 Query 52720 TTTAGCAACGAGTTGATATCGCGCGACGA 52748 || ||||| || |||| || || ||||| Sbjct 2115782 TTCAGCAATGAACTGATCTCACGTGACGA 2115754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495683456904000