Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq38 109 8e-19 seq254 105 1e-17 seq316 89.7 7e-13 >seq38 Length=3890971 Score = 109 bits (120), Expect = 8e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 97716 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAAATAGTTATAGTA 97775 |||||||||| ||| || || |||||||| ||||| ||| ||||| || ||| | || Sbjct 2747231 TTTCCAGACACTGTAGACTTTTGTGAGCGGATGGCCAACAGTGGAAAGATTGTTGTGGTG 2747172 Query 97776 GCCGCACTTGATGGGACATTTCAACGTAAACCGTTTAATAATATCTTGAATCTTATTCCA 97835 || ||||| |||||||| | || || || || |||||| |||| || | || Sbjct 2747171 GCAGCACTGGATGGGACGTACCAGCGGCAAGGCTTCGGGAATATCCTGAACCTGGTGCCT 2747112 Query 97836 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTTAAGGAAGCTTCC 97895 || |||| | || | ||||| || |||||||||||| |||||| || || || ||| Sbjct 2747111 CTAGCTGAGAACGTTATCAAACTTACCGCTGTGTGTATGTCATGCTTCAATGAGGCGTCC 2747052 Query 97896 TTTTCTAAACGATTAGGTGCAGA 97918 || | || |||||||| || || Sbjct 2747051 TTCACCAAGCGATTAGGGGCTGA 2747029 >seq254 Length=3229631 Score = 105 bits (116), Expect = 1e-17 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || ||||| ||| || || ||||||||||| ||||||||||| || ||||| || ||| Sbjct 2115766 ATCAGTTCATTGCTGAAGGTTAGTCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATG 2115825 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCT 50115 || || || || || |||||||| || || ||||| || || || |||| | ||| Sbjct 2115826 GAAGCGAAGCTACCGGAGAAGAAGATACCCTCGACTGCAGCGAACGCTACAATACGCTCA 2115885 Query 50116 CCATAACTGGCGCTGTC-ATG--TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 50172 ||| | | ||| | || || ||||||| |||||||| || || || ||| Sbjct 2115886 CCAAACGTTGCGGTCTCGCTGGCGATCCACTGCAATGCCCAATCAGCTTTGCGCTTGACA 2115945 Query 50173 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 50206 || ||||| ||||| ||||| || || ||| ||| Sbjct 2115946 CAGGGCATTGTTTCGATGGCGTTGAACAGAAAGT 2115979 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 ||||| | ||| || || || ||||||| || || ||||||||||| || ||||| ||| Sbjct 2122675 TTAGAGAGATCCACCTCCTCAGCTGTCCAGAACGAGGCCTCTGCCTTCTTGTACATTTTC 2122734 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCT 50543 |||||||||||||||| || ||||| | || ||||| Sbjct 2122735 CAGATGTCATGATATTCAATAGGGAACACCACGAATCT 2122772 >seq316 Length=1680448 Score = 89.7 bits (98), Expect = 7e-13 Identities = 181/265 (68%), Gaps = 14/265 (5%) Strand=Plus/Plus Query 47701 AGTCCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTAC-----TATCTAGAGATTGTA 47755 ||||| ||||||||||| |||| ||||||||| |||| | || | |||||| Sbjct 1398030 AGTCCTGTTGATCCAAATCCTTTCGCTCCTCTAACTGTGCATTTTAATTTGTCAATTGTA 1398089 Query 47756 CTTCCTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCG 47815 || | || ||| ||||| |||| |||| | | ||||| || || ||||| || || Sbjct 1398090 ATTTCCTCAATTCAGGATAGAATATGCGTTCACATATTAGTTGTGCAATTCTGTCCCCAA 1398149 Query 47816 TATTTACATTGAAC---GTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCC 47872 ||||||| || ||| |||| | |||| || || ||| || || || || || | Sbjct 1398150 TATTTACTTTAAACTCGGTACTCGATAAATTA--AACAATAAT-ACACCAATATTGCCTC 1398206 Query 47873 TATAATCTTCGTCTATTACACCACCTCCTATATCAATGCC---TTTTAGTGACAGTCCAG 47929 |||||||| || || |||||| |||||| | ||| || ||||| | | | || | Sbjct 1398207 AATAATCTTTATCAATAACACCAGCTCCTACGTGAATCCCATATTTTAATAATAACCCTG 1398266 Query 47930 ACCTAGGAGCTATTCTACCATAGCA 47954 | || || |||| | ||||| || Sbjct 1398267 ATCTGGGCACTATCCGTCCATAACA 1398291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717717798046800