Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1475 89.7 4e-13 seq204 82.4 6e-11 >seq1475 Length=480095 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/195 (71%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 42920 CCTTT-TGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||| || || | ||||| | || || || ||||| ||||||||| Sbjct 62652 CCTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAA 62711 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 |||| |||||| || || | || | || || || || ||| ||| | ||||| | Sbjct 62712 ATCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATC-CTGTATCTTTGCCTTGACATT 62770 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||||| | |||||| || | || || ||||| || || || |||||||| Sbjct 62771 TTCAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCAC 62830 Query 43098 AAAAATTTGCATTTT 43112 |||||||||||| || Sbjct 62831 AAAAATTTGCATGTT 62845 >seq204 Length=3085492 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| || |||||||| || | ||| |||||| || | || || || ||| Sbjct 1220939 CCCCCTCGCAGCCTCAACACCAAGTGAAGTGTGGACTCCTTCTGGATGTTATAGTCAGAC 1220880 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 |||||||| | || ||||| ||||| || |||||||||| || ||| ||||| Sbjct 1220879 AATGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAGTCTCTGCTGATC 1220827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381084355799460