Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq38 107 3e-18 seq254 84.2 3e-11 >seq38 Length=3890971 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 89775 TTTCCAGACATTGTTGAATTCTGTGAGCGTATGGCAAACGAAGGAAAGATAGTTATAGTA 89834 |||||||||| ||| || || |||||||| ||||| ||| |||||||| ||| | || Sbjct 2747231 TTTCCAGACACTGTAGACTTTTGTGAGCGGATGGCCAACAGTGGAAAGATTGTTGTGGTG 2747172 Query 89835 GCCGCACTCGATGGGACATTTCAACGTAAACCGTTTAATAATATATTGGATCTTATTCCA 89894 || ||||| |||||||| | || || || || ||||| || | || | || Sbjct 2747171 GCAGCACTGGATGGGACGTACCAGCGGCAAGGCTTCGGGAATATCCTGAACCTGGTGCCT 2747112 Query 89895 TTATCTGAAATGGTGGTAAAACTAACTGCTGTGTGTATGAAATGCTTTAAGGAGGCTTCC 89954 || |||| | || | ||||| || |||||||||||| |||||| || ||||| ||| Sbjct 2747111 CTAGCTGAGAACGTTATCAAACTTACCGCTGTGTGTATGTCATGCTTCAATGAGGCGTCC 2747052 Query 89955 TTTTCCAAACGATTGGG 89971 || |||| ||||| || Sbjct 2747051 TTCACCAAGCGATTAGG 2747035 >seq254 Length=3229631 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/203 (70%), Gaps = 11/203 (5%) Strand=Plus/Plus Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || ||||||||||| ||||||||||| || ||||| || || || || || || Sbjct 2115781 AAGGTTAGTCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGCTACCG 2115840 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGG- 42230 || |||||||| || || ||||| || || || | || | ||| ||| ||| ||| Sbjct 2115841 GAGAAGAAGATACCCTCGACTGCAGCGAACGCTACAATACGCTCACCA-AACGTTGCGGT 2115899 Query 42231 --CACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 | ||| | ||||||| |||||||| || || || ||||| ||||| || Sbjct 2115900 CTCGCTGGC---GATCCACTGCAATGCCCAATCAGCTTTGCGCTTGACACAGGGCATTGT 2115956 Query 42289 TTCTATGGCATTAAAGAGATAGT 42311 ||| ||||| || || ||| ||| Sbjct 2115957 TTCGATGGCGTTGAACAGAAAGT 2115979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670624352341200