Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq254 102 1e-16 seq907 93.3 6e-14 >seq254 Length=3229631 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || ||||| || || ||||| |||||||| || ||||| || || ||||||| ||| Sbjct 2115875 GTAGCGTTCGCTGCAGTCGAGGGTATCTTCTTCTCCGGTAGCTTCGCTTCCATCTTCTGG 2115816 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 ||||||||||| || |||||||||||||| || ||| || || | || || || ||| Sbjct 2115815 CTCAAGAAGCGTGGCCTCATGCCCGGACTAACCTTCAGCAATGAACTGATCTCACGTGAC 2115756 Query 125550 GAGG 125553 |||| Sbjct 2115755 GAGG 2115752 >seq907 Length=523837 Score = 93.3 bits (102), Expect = 6e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 97134 TACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATC 97193 |||||| ||||| || ||| |||| || | ||||| |||||| |||||| Sbjct 396220 TACGAGAGTGAGGGGCGCTACACAAGACAGGTGCAGGCACGCCAACTGTTCTTCGCCATC 396279 Query 97194 GTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGC 97253 || || |||||||||||||| ||||||||| | || |||||| || || ||| Sbjct 396280 CTGGACGCCCAGGTAGAGACTGGTGTTCCGTACATGTTATATAAGGATGCCTGCAACCGC 396339 Query 97254 AACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTA 97313 || ||||| || | || | || ||||||||| || ||| || ||||| || ||||| Sbjct 396340 AAGAGCAATCAGCAGAACCTTGGGACCATCAAGTGCAGCAACCTCTGCACAGAGATTGTC 396399 Query 97314 GAGTACGCC 97322 |||||| || Sbjct 396400 GAGTACACC 396408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740490714961200