Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq9379 194 1e-44 >seq9379 Length=20973 Score = 194 bits (214), Expect = 1e-44 Identities = 205/270 (76%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 99219 GATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACTGG 99278 ||||||| | |||| || ||| |||||||| | ||| | | ||| |||||||| || Sbjct 8294 GATCTCCTCGTCGGTGATGAAGGCGCCCTGCAGGCGGGTCGGCTTGCCCGCCCCCATCGG 8235 Query 99279 CAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCAC 99338 ||| || | | |||| ||||| || ||||| | |||||| || || || ||||| || Sbjct 8234 CAGGAACAGCGCGTCGCCCATACCGATGAGCTTCTCGGCCCCCTGCTGATCGAGGATGAC 8175 Query 99339 CCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGAT 99398 ||| || ||||| |||| |||||||| | ||| ||||| ||||||||| ||||||| Sbjct 8174 CCGCGAGTCCGTGAGCGACGACGTGGCGAAGGCCAGACGCGACGGCACGTTGGTCTTGAT 8115 Query 99399 GAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGC 99458 || || || || || ||||| ||||| ||||||||||| || || || || || || || Sbjct 8114 CAGACCGGTGACGACGTCCACCGAGGGACGCTGCGTCGCGAGCACCAGGTGGATACCCGC 8055 Query 99459 CGCACGCGCCTTCTGCGCGATGCGGACAAT 99488 |||||||||||||||| |||||| || || Sbjct 8054 GGCACGCGCCTTCTGCGTGATGCGCACGAT 8025 Score = 154 bits (170), Expect = 1e-32 Identities = 405/609 (67%), Gaps = 28/609 (5%) Strand=Plus/Minus Query 99599 CCTGCATCTGCCGGTATCGGTCGTCCATCTCTACGGTGAGCCACCGCAGCGTTTTCACCG 99658 ||||||| | | |||| || | |||||||| || |||||| |||| | ||| Sbjct 7857 CCTGCATGTCCTGGTAGCGCTGCTCCATCTCCTCGACCAGCCACGCGAGCGCGGCCGCCG 7798 Query 99659 CCTCGTCAGCCTCTGTAACCA-CGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTG 99717 ||| | | || || | | |||| || || |||| ||||| || | ||| || || Sbjct 7797 CCTTCTTCGGCTGCGTGATGATCGGGGTGATGA-GGTGCGGGATGCCCTCGTAGGGCGTC 7739 Query 99718 AGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTA 99776 |||||||| ||| || |||||||| | ||| | || || || |||||||| Sbjct 7738 AGCTCGAC-CATCTTCGGGTCGATGAGGATCATCCGTACTTCCTCGGGCGTCGCCCGAGC 7680 Query 99777 GAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGC 99836 ||||||||| |||||||| ||||||| |||| ||||||||||| || |||| || || Sbjct 7679 GAGCAGCGACACCAGCATCGAGTTGACGAAGGACGACTTGCCCGAGCCCGTCGACCCGGC 7620 Query 99837 CACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCCTTGCCCTCGACGTCCTT 99896 ||||| ||| || |||||||| |||||||| | || | | |||||||| |||||| Sbjct 7619 CACCAACAGGTGGGGCATCTTGGCCAGGTTGGCGCTGACGAAGTCGCCCTCGATGTCCTT 7560 Query 99897 GCCCACTGCCACGGTCAACGGATGGTCGT----CTTC--------GGGAACGATGTGC-- 99942 |||| ||| || ||| | | ||| || |||| ||| || || || Sbjct 7559 CCCCA--GCC-CGATCACCAGCGGGTGGTGATCCTTCCGGGTGCTGGGCGCGGTGAGCAC 7503 Query 99943 ----TGCAACCGCACAGTCTGCCGTTCCGGCCGGGGGAGCTCGATTCCTACGGCTGTTTT 99998 || ||||| ||| || || | || | |||||| || ||||| | || Sbjct 7502 GTCGGACAGGCGCACCATCTCGCGGTCGGAGTTCGGCACCTCGATGCCCACGGCGGACTT 7443 Query 99999 CCCGGGGATGGGGGCAACCACCCGGACGCTCTCTGTTGCGAGCGCGTAGGCCAACTGGGA 100058 ||||||||||| || | || || ||| | || || || | ||||||||| | | | Sbjct 7442 GCCGGGGATGGGCGCCAGCAGACGCACGTTGTCCGTGGCCACCGCGTAGGCGATGTTGCG 7383 Query 100059 CTGTAGTTGTGCGACTTTCTGGATGCGCACACCCGGCCCCAGTGTGATCTCGTAGCGTGT 100118 | || | || |||| | ||| ||||| ||||| | ||||||||| || Sbjct 7382 CGCGAGGGCGGTGATCTTCTCCACCTTCACGCCCGGACCCAGCTCCACCTCGTAGCGGGT 7323 Query 100119 GACGCTCGGTCCATCGGTGCGGCCGGTGACCTTGGCCTCGATGTCGAACT-CTC--GGAG 100175 ||| |||| || |||| ||||||||| ||| ||||| | ||||| ||| ||| Sbjct 7322 CACGGTCGGCCCGCGGGTGAATCCGGTGACCGCGGCGTCGATCTTGAACTGCTCGAGGAC 7263 Query 100176 CGCGGAGAT 100184 | ||||||| Sbjct 7262 CTCGGAGAT 7254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354377945726820