Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq154 95.1 9e-15 seq1475 86.0 5e-12 >seq154 Length=1683969 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| ||||| || |||||||| || || | | | ||||| Sbjct 580005 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 579946 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | || | || || ||||| ||||||||||| || || | Sbjct 579945 AGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGA 579886 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| | || |||||||| || || || || || ||||||||| Sbjct 579885 ATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACTTCCAAAGTGATGGTTTTA 579826 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || ||||| |||||| Sbjct 579825 CCGGTCAATGTCTTCACGAAAATCTGCATA 579796 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| ||||| || |||||||| || ||| | | | ||||| Sbjct 579040 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCATCTTCC 578981 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | || | || || ||||| ||||||||||| || || Sbjct 578980 AGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGG 578921 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || || ||||| || || || ||||| |||||||| Sbjct 578920 ATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTT 578861 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||| || || || |||||| Sbjct 578860 CCTGTAAGGGTTTTCACGAAGATCTGCATA 578831 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||||||||| || || || || || |||||||| || || ||| | || || Sbjct 580461 ACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCATCCTCA 580402 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | || | || || ||||| ||||||||||| || || | Sbjct 580401 AGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGA 580342 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 | ||| ||| ||| |||| |||||||| || || || |||||||| || || Sbjct 580341 ACTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAACCTCCAAGGTAATTGTCTTT 580282 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || || || ||||| |||||| Sbjct 580281 CCTGTTAGGGTCTTCACGAAAATCTGCATA 580252 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || |||||||| ||| || | | | ||||| Sbjct 578584 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCC 578525 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || |||||| | || | || || ||||| ||||||||||| || || | Sbjct 578524 AGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGA 578465 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||||||| || || ||||| || || |||||| Sbjct 578464 ATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCTAAAGTGATAGTTTTA 578405 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || || || |||||| Sbjct 578404 CCAGTCAATGTCTTCACGAAGATCTGCATA 578375 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| || || | || || || ||||| || || || || |||||||| || Sbjct 579795 CCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 579736 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | ||||| |||||| | || | || || ||||| ||| Sbjct 579735 AGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 579676 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||| ||| | || || |||||| || || Sbjct 579675 ATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACT 579616 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| |||||||| ||||| || ||||| || || || |||||| Sbjct 579615 TCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCATA 579568 >seq1475 Length=480095 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 |||| ||||| ||||| || ||| | | | | |||||||| ||||| || || | | Sbjct 62653 CTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAAA 62712 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATT 15292 ||| || || ||||| || ||||| || || || || ||||| ||| ||| || Sbjct 62713 TCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGC-CTTGACATTT 62771 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || || || || || || || | ||||||||||||||| || || ||||| ||| Sbjct 62772 TCAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACA 62831 Query 15353 AAAATTTGCATATT 15366 ||||||||||| || Sbjct 62832 AAAATTTGCATGTT 62845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361908309199170