Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1481 127 5e-24 seq154 122 2e-22 seq204 96.9 8e-15 >seq1481 Length=432034 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| |||||||| ||||| || | |||| || ||||||| || || || ||||| | Sbjct 233765 CTTTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGA 233824 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 | || | ||| ||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 233825 TCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTCGCCTTAACATTCT 233884 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | || || || |||||||| | ||||| || || || || || || ||||||| Sbjct 233885 CGATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAA 233944 Query 104550 ATATCTGCATTTT 104562 | |||||||| || Sbjct 233945 AAATCTGCATGTT 233957 Score = 104 bits (114), Expect = 5e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | || || || || | ||| || || || ||||| || || ||||| Sbjct 222096 CCACCTCTCAGACGCAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAA 222155 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | ||| ||||| | |||||||| |||||||| | ||||| || || || || Sbjct 222156 AGTGTGCGACCATCTTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGGG 222215 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 ||||||||||| || || ||||| || || || ||||| | ||||| Sbjct 222216 ATTCCTTCTTTGTCTTGGATCTTAGCCTTCACGTTTTCAATTGTATC 222262 >seq154 Length=1683969 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||| ||||| || || || | || ||||| || || || ||| Sbjct 578800 GTTGACTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCA 578741 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || |||||||||||||| || || || |||||| Sbjct 578740 GCGAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCTTGGATTTTGGCTTTT 578681 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| ||| || || || | ||| || ||||| || || || || Sbjct 578680 ACGTTCTCGATGGTATCAGAAGGCTCAACTTCCAATGTGATGGTCTTTCCTGTTAGGGTC 578621 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 578620 TTCACGAAAATCTGCAT 578604 >seq204 Length=3085492 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 ||||||| ||||| | || | || | ||| || || ||||| || ||||||||||| Sbjct 1220939 CCCCCTCGCAGCCTCAACACCAAGTGAAGTGTGGACTCCTTCTGGATGTTATAGTCAGAC 1220880 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | ||| ||||| | ||||| ||||||||||| || ||||| ||||||||||| Sbjct 1220879 AATGTACGACCATCTTCCAACTGTTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGGA 1220820 Query 104453 ATTCCT 104458 |||||| Sbjct 1220819 ATTCCT 1220814 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 || ||||||||||| || || ||||| |||||||| | ||||| ||||| |||||| Sbjct 1215760 CCCTCTTTATCCTGGATTTTAGCTTTCACATTTTCAATAGTATCAGACGGTTCAACCTCT 1215701 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || ||||| || || | ||||| ||||| ||||||||| || Sbjct 1215700 AGGGTGATTGTCTTCCCTGTCAAAGTTTTGACAAAGATCTGCATTGTG 1215653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150493051839960